Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is eda [H]
Identifier: 182680896
GI number: 182680896
Start: 431717
End: 432376
Strand: Reverse
Name: eda [H]
Synonym: XfasM23_0334
Alternate gene names: 182680896
Gene position: 432376-431717 (Counterclockwise)
Preceding gene: 182680897
Following gene: 182680894
Centisome position: 17.05
GC content: 56.21
Gene sequence:
>660_bases ATGAGCATTACTGAAACCCAAAACAAAGCCGAATCCCTGTTATACAACGCCGGCATCCTACCTGTTGTAACCGTGGACAC AGTGGATCAGGCGCGCCGTGTCGTCGGCGCACTGCTGGAAGGCGGCCTCACCACGATCGAACTGACCTTACGCACCCCAG TGGCCCTGGAAGCATTAGCAACTCTCAAGCGCGAACAACCAGAAATCACGATCGGAGCAGGGACCGTACTCAACGAACAC CAACTCCGCCAATCAATCGACGCTGGAGCCGACTTTCTTATTACACCAGGCACCCCTCCCACCTTGGCACAGCTGCTAGC CGATGCACCAATCCCCGCAGTACCGGGTGCGGCCACAGCAACAGAATTGCTCGCACTCATGGTGTTGGGCTTCCACGTCT GCAAACTGTTTCCGGCCAATGTGGTGGGCGGCCTGCACATGCTCACCAGCTTGGCCGGCCCCCTAACCAATCTGAAACTA TGCCCCACTGGTGGTATCAACGAAACCAATGCTAGCGACTATCTGGCACAACCCAACGTCATCTGCATCGGCGGCTCATG GATGGTTCCCAAAGACTGGCTCGTTCAAGGGCATTGGGACAACATCAAAAACTCCTCCTCAAAGGCCGCAGCAATCATCC AACAAGCGCGCAGCCACTAA
Upstream 100 bases:
>100_bases AAGCCCCCTGAGACATCACCCAATACACAGCCCCAAATAGCACACACCGCTTGCCCTGAATCCCCTGTCCTATTCGACAT CGCCCTATTTAAAGACACAA
Downstream 100 bases:
>100_bases ATATCGATTCATCTGCAGATCTAGGGACATATCTGTAATCCCATGCCCAGTAGCCACTTATCGAAAAAGTAATCTGAAAA ATCTGTTGCAGTTTTAGCGA
Product: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
Products: NA
Alternate protein names: KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MSITETQNKAESLLYNAGILPVVTVDTVDQARRVVGALLEGGLTTIELTLRTPVALEALATLKREQPEITIGAGTVLNEH QLRQSIDAGADFLITPGTPPTLAQLLADAPIPAVPGAATATELLALMVLGFHVCKLFPANVVGGLHMLTSLAGPLTNLKL CPTGGINETNASDYLAQPNVICIGGSWMVPKDWLVQGHWDNIKNSSSKAAAIIQQARSH
Sequences:
>Translated_219_residues MSITETQNKAESLLYNAGILPVVTVDTVDQARRVVGALLEGGLTTIELTLRTPVALEALATLKREQPEITIGAGTVLNEH QLRQSIDAGADFLITPGTPPTLAQLLADAPIPAVPGAATATELLALMVLGFHVCKLFPANVVGGLHMLTSLAGPLTNLKL CPTGGINETNASDYLAQPNVICIGGSWMVPKDWLVQGHWDNIKNSSSKAAAIIQQARSH >Mature_218_residues SITETQNKAESLLYNAGILPVVTVDTVDQARRVVGALLEGGLTTIELTLRTPVALEALATLKREQPEITIGAGTVLNEHQ LRQSIDAGADFLITPGTPPTLAQLLADAPIPAVPGAATATELLALMVLGFHVCKLFPANVVGGLHMLTSLAGPLTNLKLC PTGGINETNASDYLAQPNVICIGGSWMVPKDWLVQGHWDNIKNSSSKAAAIIQQARSH
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=203, Percent_Identity=41.3793103448276, Blast_Score=159, Evalue=2e-40,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.2.14 [H]
Molecular weight: Translated: 23026; Mature: 22895
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITETQNKAESLLYNAGILPVVTVDTVDQARRVVGALLEGGLTTIELTLRTPVALEALA CCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH TLKREQPEITIGAGTVLNEHQLRQSIDAGADFLITPGTPPTLAQLLADAPIPAVPGAATA HHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCCCCCHHH TELLALMVLGFHVCKLFPANVVGGLHMLTSLAGPLTNLKLCPTGGINETNASDYLAQPNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHCCCCE ICIGGSWMVPKDWLVQGHWDNIKNSSSKAAAIIQQARSH EEECCCEECCHHHEEECCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SITETQNKAESLLYNAGILPVVTVDTVDQARRVVGALLEGGLTTIELTLRTPVALEALA CCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH TLKREQPEITIGAGTVLNEHQLRQSIDAGADFLITPGTPPTLAQLLADAPIPAVPGAATA HHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCCCCCHHH TELLALMVLGFHVCKLFPANVVGGLHMLTSLAGPLTNLKLCPTGGINETNASDYLAQPNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHCCCCE ICIGGSWMVPKDWLVQGHWDNIKNSSSKAAAIIQQARSH EEECCCEECCHHHEEECCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]