Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is fabZ
Identifier: 182680882
GI number: 182680882
Start: 416060
End: 416542
Strand: Reverse
Name: fabZ
Synonym: XfasM23_0320
Alternate gene names: 182680882
Gene position: 416542-416060 (Counterclockwise)
Preceding gene: 182680883
Following gene: 182680881
Centisome position: 16.43
GC content: 49.28
Gene sequence:
>483_bases ATGAGCGATTCACCCACTACCGCTCACACTCGTCTGGAATTACCAATCGATATCATTAGAATCCAAGCATTGCTGCCACA CCGCTATCCCTTTCTATTGGTCGACCGAATACTGGAACTAGACCAGAAGCAAAAGCGTATCGTTGCTCAGAAAAATGTGT CCATCAACGAACCATTCTTTCAAGGACATTTCCCTGAACATCCAGTCATGCCAGGCGTTCTTATCATTGAAGCACTTGCG CAAGCCGGCGGCGTGATGACCCAACTAAACCTTAGCCATAATGGGCATTCCAGCCTCTTGTTTTATATGGTTAGAGTCGA CAATGCCCGCTTCAACAAACAGGTGGTGCCCGGCGACATCCTGATCCTGGATATGACGATGAAACGACGGATCCGCAATA TGGGCTGCTACTACGGCGAAGCGCGGGTTAACGGCGAAGTCGTCGCTTGCGCTGATATCATGTGTGCTGGTGTCAAGTCT TAA
Upstream 100 bases:
>100_bases CTCCATTGACCGACAATCGTACTTGGCGCAAAAACGCTGTACGGTTTAAACAGCTGGATATGCTGGTGCGCCGCATGATG GCCGTCAGTAAGGAGAAAGC
Downstream 100 bases:
>100_bases GCGCCCAGTATGGAAGCAGTGATGAATAAGCATGCGTCCTTGATCCACCCAACCGCAGTGATCGCTCCATCGGCCACGTT AGCCCCAGACGTACAGATTG
Product: (3R)-hydroxymyristoyl-ACP dehydratase
Products: NA
Alternate protein names: (3R)-hydroxymyristoyl ACP dehydrase
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSDSPTTAHTRLELPIDIIRIQALLPHRYPFLLVDRILELDQKQKRIVAQKNVSINEPFFQGHFPEHPVMPGVLIIEALA QAGGVMTQLNLSHNGHSSLLFYMVRVDNARFNKQVVPGDILILDMTMKRRIRNMGCYYGEARVNGEVVACADIMCAGVKS
Sequences:
>Translated_160_residues MSDSPTTAHTRLELPIDIIRIQALLPHRYPFLLVDRILELDQKQKRIVAQKNVSINEPFFQGHFPEHPVMPGVLIIEALA QAGGVMTQLNLSHNGHSSLLFYMVRVDNARFNKQVVPGDILILDMTMKRRIRNMGCYYGEARVNGEVVACADIMCAGVKS >Mature_159_residues SDSPTTAHTRLELPIDIIRIQALLPHRYPFLLVDRILELDQKQKRIVAQKNVSINEPFFQGHFPEHPVMPGVLIIEALAQ AGGVMTQLNLSHNGHSSLLFYMVRVDNARFNKQVVPGDILILDMTMKRRIRNMGCYYGEARVNGEVVACADIMCAGVKS
Specific function: Involved in saturated fatty acids biosynthesis
COG id: COG0764
COG function: function code I; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioester dehydratase family. FabZ subfamily
Homologues:
Organism=Escherichia coli, GI1786377, Length=151, Percent_Identity=45.6953642384106, Blast_Score=134, Evalue=4e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FABZ_XYLF2 (B2I7P0)
Other databases:
- EMBL: CP001011 - RefSeq: YP_001829042.1 - ProteinModelPortal: B2I7P0 - GeneID: 6201875 - GenomeReviews: CP001011_GR - KEGG: xfn:XfasM23_0320 - HOGENOM: HBG433282 - OMA: KERRGVA - ProtClustDB: PRK00006 - GO: GO:0005737 - HAMAP: MF_00406 - InterPro: IPR013114 - InterPro: IPR010084 - TIGRFAMs: TIGR01750
Pfam domain/function: PF07977 FabA
EC number: 4.2.1.-
Molecular weight: Translated: 17996; Mature: 17865
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: ACT_SITE 63-63
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSPTTAHTRLELPIDIIRIQALLPHRYPFLLVDRILELDQKQKRIVAQKNVSINEPFF CCCCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC QGHFPEHPVMPGVLIIEALAQAGGVMTQLNLSHNGHSSLLFYMVRVDNARFNKQVVPGDI CCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEEECCCCCCCEECCCCE LILDMTMKRRIRNMGCYYGEARVNGEVVACADIMCAGVKS EEEEHHHHHHHHHCCCEECCEECCCCEEEEHHHHHCCCCC >Mature Secondary Structure SDSPTTAHTRLELPIDIIRIQALLPHRYPFLLVDRILELDQKQKRIVAQKNVSINEPFF CCCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCC QGHFPEHPVMPGVLIIEALAQAGGVMTQLNLSHNGHSSLLFYMVRVDNARFNKQVVPGDI CCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEEECCCCCCCEECCCCE LILDMTMKRRIRNMGCYYGEARVNGEVVACADIMCAGVKS EEEEHHHHHHHHHCCCEECCEECCCCEEEEHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA