Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is plsB [H]
Identifier: 182680873
GI number: 182680873
Start: 400813
End: 403404
Strand: Reverse
Name: plsB [H]
Synonym: XfasM23_0310
Alternate gene names: 182680873
Gene position: 403404-400813 (Counterclockwise)
Preceding gene: 182680876
Following gene: 182680872
Centisome position: 15.91
GC content: 52.2
Gene sequence:
>2592_bases ATGCCAAAAAAGAACTCCCCACTCCTCCCGAAAGAAACGACGACTACTCAATCCAGCGTTGACACCTCGGGATCATCCAA TCTGACCTGGCCCGTCTCTGAACACACGATACGTCGCCCGCTATGGGCGCGCCTGCTTGGCCAGATCCTTGATCCTTGGT TGGATCTCTCCATAGAGCCAGAACACTCTGTTCAATATAACGATGGCCGCCCCATCATCTACGTGCTGGAAGACTATGGC CTGTGCAATACACTGATCCTGGACAAAGCCTGCCGCAAAACCAAGTTGCCATCTCCATTGATACCACTGTCAGGCAATCC ACTACAGCGCAAGCGTGCTTACTTAGCCCTGTCGCGACGTAGCTCCAGCAACTCACTGATCCCTAACCAGCGCGGCGGCA AAACACACTCCGACTCGCTAGCCAATCTACTCCAAGCACACCGTATACGTGACACCCTTGATGTGCATTTAGTGCCCGTA TCCATCTTCATTGGACGTACACCAGATCGGCAAAGTGGCTGGTTTGCAGTGCTTTTCTCGGAAAATTGGGCGCTCGTTGG TCGCTTCCGACGCATCCTGGCGATACTACTCAATGGACGCAACACCATTGTGTGCTTCGCACCCCCCATCTCAGTACGTC AAACACTGAACGAAGGTTTGCCGCCTGAACGTACTCTGCGCAAGCTACAACGTGTATTACGCACCCACTTCCGCCGTATT CGGGAAACAGTGATCGGTCCAGATCTGTCAACCCGTCGCTTACTGGTAGACAATGTTCTGGCAACAGAAGCAGTGCGTGA AGCCATTGGCGCCCAAGCCAAGCGCGACGGTACCGATCTGTCGGAAACCTGGCGCAAGGCGCAAGCTTACGCCTGGGAAA TCGCTGCCGACTATTCCAGTCCTGTCATACGTTCGGCCGATTTTTTGTTCAGCCATGTCTGGAACCGCATCTATGCCGGT GTACTGGTACACCACGTGGACAGCTTCAAAGAGATATCACCAGGGCACGAGATTGTGTATGTACCCAGCCACCGCAGCCA TATGGACTACCTGCTCCTGTCGTACTGCCTGTACAAATGCAGCATCGGGTTACCACACATCGTGGCAGGCATCAACCTGA ATCTTCCTGTCGTGGGCACACTGCTCCGCAAATGCGGCGCATTTTTCATCCGTCGATCCATCAAAGGCAACATGCTGTAT TCAGTAGTGCTCAGCGAATACGTAGCGCAGCTGGTGGCCGGTGGTTATTCCCTCGAATACTTTATCGAAGGCGGCCGCTC ACGTACTGGCCGCCTGCTGCAACCCAAAGGTGGCATGATCATGATGACGGTGCAGGCCTTCTTGCGCCAGCCACGCAGGC CCGTACTGTTCCAGCCAATCTATATCGGCTATGAAAAACTGATGGAAGGCACCAGCTACCTGGATGAACTGTCCGGCGAA CCCAAAAAGAAAGAGTCGATCTGGAGGGTGTTCTGGAATATTCCCAAAGTGCTCAAACAGAAGTATGGCCAGGTTGTGGT GAACTTCGGCGAGCCAATCGCACTCAACGACGTACTCGCCGAACTAGCCCCAGAATGGGAAGGTCAAGCACTCAACGAAA ATGAGAAACCAGCCTGGTTATCAAGCACCGTCAACCATCTTGCTCGGCAAATTCAGACTCGCATCAACAGCGCCGCTGAC GTCAACCCAATCAACTTATTGGCACTTGCACTACTATCCACACCTAAACATGCGATGGGTGAAGCTGACCTGATCGCGCA AATTACTCTGTGCAAAAAAATACTGCTTGAATTGCCCTATTCAAACCGAGTAACCATCACTCCACACACCCCAGAACGCA TCATTGCCCACGCCGAACAAATCAACATACTCACCCGTGTCCACCATCCACTTGGCGATGTATTGAGAGTCGATGGAGAC AATGCAGTTCTGCTCAGTTACTTCCGCAACAACGTGTTGCATCTATTTACTGCCTCCGCGTGGGTGGCCTGTTGCTTCAA AAACAACCGACGCATGAGCCGCATTGCTCTGATCCGTCTGGGGGTTGGTATGTATCCATTCCTACAAGCCGAATTATTTC TACCATGGACTGAGGACCAATTTGCCCAACACATCCAACAGGTCATTGAATTATTTGTCCGGGAAGGGCTTCTCCTATCA GCCGGCAATGAGGAAGAAGACCCACTCACACGCAACACAAGCCAGACCGACGAAGTCTTCCGCCTACGGGCGATCAGTCA TTCATTGCAACAAGCATTCGAGCGCTACTACATCACCATTTCAATATTGGTGAAAAACGGCCCTGGAACCCTCAGTGCAT CCGAATTGGAGAGCCTGTGCCAGCTCGCTGCACAACGCTTAAGCCTGCTCTATGCGTCGACCGCACCGGAGTTTTTTGAT AAAGGACTGTTCCGAGGCTTCATCCAAAAACTTCGCGAACTGAACTTAGTATGGCCAGACACATATAGCAAACTGCTATT TGACGAACGTCTAGACACATCCGCCAAAGACGCTCAAGTGATCCTTGGCCGCGAACTACGGCACACGATCGAACGCATCA GTCCGGAAGCAACGAAACCTGCACCAAAATAA
Upstream 100 bases:
>100_bases GCATTGGAAACATGGATGAAAATACACATAAATGAATGGCGGTGTGCGCATCTGTCACCATGAAAGACTTGCCGATACCC GCTAAGCGATAATACCGAGG
Downstream 100 bases:
>100_bases AGATATACAGCAACGACACAACACAGACTACCGATAACAATGATCTACCTCTTTGGTGGCACGAGGCGCACCTAACGCGC TAAGTCGTTTTTTCATTACA
Product: glycerol-3-phosphate acyltransferase
Products: NA
Alternate protein names: GPAT [H]
Number of amino acids: Translated: 863; Mature: 862
Protein sequence:
>863_residues MPKKNSPLLPKETTTTQSSVDTSGSSNLTWPVSEHTIRRPLWARLLGQILDPWLDLSIEPEHSVQYNDGRPIIYVLEDYG LCNTLILDKACRKTKLPSPLIPLSGNPLQRKRAYLALSRRSSSNSLIPNQRGGKTHSDSLANLLQAHRIRDTLDVHLVPV SIFIGRTPDRQSGWFAVLFSENWALVGRFRRILAILLNGRNTIVCFAPPISVRQTLNEGLPPERTLRKLQRVLRTHFRRI RETVIGPDLSTRRLLVDNVLATEAVREAIGAQAKRDGTDLSETWRKAQAYAWEIAADYSSPVIRSADFLFSHVWNRIYAG VLVHHVDSFKEISPGHEIVYVPSHRSHMDYLLLSYCLYKCSIGLPHIVAGINLNLPVVGTLLRKCGAFFIRRSIKGNMLY SVVLSEYVAQLVAGGYSLEYFIEGGRSRTGRLLQPKGGMIMMTVQAFLRQPRRPVLFQPIYIGYEKLMEGTSYLDELSGE PKKKESIWRVFWNIPKVLKQKYGQVVVNFGEPIALNDVLAELAPEWEGQALNENEKPAWLSSTVNHLARQIQTRINSAAD VNPINLLALALLSTPKHAMGEADLIAQITLCKKILLELPYSNRVTITPHTPERIIAHAEQINILTRVHHPLGDVLRVDGD NAVLLSYFRNNVLHLFTASAWVACCFKNNRRMSRIALIRLGVGMYPFLQAELFLPWTEDQFAQHIQQVIELFVREGLLLS AGNEEEDPLTRNTSQTDEVFRLRAISHSLQQAFERYYITISILVKNGPGTLSASELESLCQLAAQRLSLLYASTAPEFFD KGLFRGFIQKLRELNLVWPDTYSKLLFDERLDTSAKDAQVILGRELRHTIERISPEATKPAPK
Sequences:
>Translated_863_residues MPKKNSPLLPKETTTTQSSVDTSGSSNLTWPVSEHTIRRPLWARLLGQILDPWLDLSIEPEHSVQYNDGRPIIYVLEDYG LCNTLILDKACRKTKLPSPLIPLSGNPLQRKRAYLALSRRSSSNSLIPNQRGGKTHSDSLANLLQAHRIRDTLDVHLVPV SIFIGRTPDRQSGWFAVLFSENWALVGRFRRILAILLNGRNTIVCFAPPISVRQTLNEGLPPERTLRKLQRVLRTHFRRI RETVIGPDLSTRRLLVDNVLATEAVREAIGAQAKRDGTDLSETWRKAQAYAWEIAADYSSPVIRSADFLFSHVWNRIYAG VLVHHVDSFKEISPGHEIVYVPSHRSHMDYLLLSYCLYKCSIGLPHIVAGINLNLPVVGTLLRKCGAFFIRRSIKGNMLY SVVLSEYVAQLVAGGYSLEYFIEGGRSRTGRLLQPKGGMIMMTVQAFLRQPRRPVLFQPIYIGYEKLMEGTSYLDELSGE PKKKESIWRVFWNIPKVLKQKYGQVVVNFGEPIALNDVLAELAPEWEGQALNENEKPAWLSSTVNHLARQIQTRINSAAD VNPINLLALALLSTPKHAMGEADLIAQITLCKKILLELPYSNRVTITPHTPERIIAHAEQINILTRVHHPLGDVLRVDGD NAVLLSYFRNNVLHLFTASAWVACCFKNNRRMSRIALIRLGVGMYPFLQAELFLPWTEDQFAQHIQQVIELFVREGLLLS AGNEEEDPLTRNTSQTDEVFRLRAISHSLQQAFERYYITISILVKNGPGTLSASELESLCQLAAQRLSLLYASTAPEFFD KGLFRGFIQKLRELNLVWPDTYSKLLFDERLDTSAKDAQVILGRELRHTIERISPEATKPAPK >Mature_862_residues PKKNSPLLPKETTTTQSSVDTSGSSNLTWPVSEHTIRRPLWARLLGQILDPWLDLSIEPEHSVQYNDGRPIIYVLEDYGL CNTLILDKACRKTKLPSPLIPLSGNPLQRKRAYLALSRRSSSNSLIPNQRGGKTHSDSLANLLQAHRIRDTLDVHLVPVS IFIGRTPDRQSGWFAVLFSENWALVGRFRRILAILLNGRNTIVCFAPPISVRQTLNEGLPPERTLRKLQRVLRTHFRRIR ETVIGPDLSTRRLLVDNVLATEAVREAIGAQAKRDGTDLSETWRKAQAYAWEIAADYSSPVIRSADFLFSHVWNRIYAGV LVHHVDSFKEISPGHEIVYVPSHRSHMDYLLLSYCLYKCSIGLPHIVAGINLNLPVVGTLLRKCGAFFIRRSIKGNMLYS VVLSEYVAQLVAGGYSLEYFIEGGRSRTGRLLQPKGGMIMMTVQAFLRQPRRPVLFQPIYIGYEKLMEGTSYLDELSGEP KKKESIWRVFWNIPKVLKQKYGQVVVNFGEPIALNDVLAELAPEWEGQALNENEKPAWLSSTVNHLARQIQTRINSAADV NPINLLALALLSTPKHAMGEADLIAQITLCKKILLELPYSNRVTITPHTPERIIAHAEQINILTRVHHPLGDVLRVDGDN AVLLSYFRNNVLHLFTASAWVACCFKNNRRMSRIALIRLGVGMYPFLQAELFLPWTEDQFAQHIQQVIELFVREGLLLSA GNEEEDPLTRNTSQTDEVFRLRAISHSLQQAFERYYITISILVKNGPGTLSASELESLCQLAAQRLSLLYASTAPEFFDK GLFRGFIQKLRELNLVWPDTYSKLLFDERLDTSAKDAQVILGRELRHTIERISPEATKPAPK
Specific function: De novo phospholipid biosynthesis; first step. [C]
COG id: COG2937
COG function: function code I; Glycerol-3-phosphate O-acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GPAT/DAPAT family [H]
Homologues:
Organism=Homo sapiens, GI7657134, Length=391, Percent_Identity=30.9462915601023, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI190358539, Length=577, Percent_Identity=23.9168110918544, Blast_Score=160, Evalue=5e-39, Organism=Escherichia coli, GI87082362, Length=783, Percent_Identity=36.1430395913154, Blast_Score=461, Evalue=1e-130, Organism=Caenorhabditis elegans, GI71988723, Length=318, Percent_Identity=30.8176100628931, Blast_Score=146, Evalue=5e-35, Organism=Caenorhabditis elegans, GI25147672, Length=279, Percent_Identity=30.8243727598566, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI71988728, Length=194, Percent_Identity=38.659793814433, Blast_Score=135, Evalue=7e-32, Organism=Drosophila melanogaster, GI17864692, Length=327, Percent_Identity=32.1100917431193, Blast_Score=160, Evalue=5e-39, Organism=Drosophila melanogaster, GI21357731, Length=298, Percent_Identity=32.5503355704698, Blast_Score=153, Evalue=4e-37, Organism=Drosophila melanogaster, GI24650754, Length=298, Percent_Identity=32.5503355704698, Blast_Score=153, Evalue=4e-37, Organism=Drosophila melanogaster, GI24650752, Length=298, Percent_Identity=32.5503355704698, Blast_Score=153, Evalue=4e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002123 - InterPro: IPR022284 [H]
Pfam domain/function: PF01553 Acyltransferase [H]
EC number: =2.3.1.15 [H]
Molecular weight: Translated: 97620; Mature: 97489
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKKNSPLLPKETTTTQSSVDTSGSSNLTWPVSEHTIRRPLWARLLGQILDPWLDLSIEP CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCHHHCCCCCC EHSVQYNDGRPIIYVLEDYGLCNTLILDKACRKTKLPSPLIPLSGNPLQRKRAYLALSRR CCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC SSSNSLIPNQRGGKTHSDSLANLLQAHRIRDTLDVHLVPVSIFIGRTPDRQSGWFAVLFS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCCEEEEEEE ENWALVGRFRRILAILLNGRNTIVCFAPPISVRQTLNEGLPPERTLRKLQRVLRTHFRRI CCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RETVIGPDLSTRRLLVDNVLATEAVREAIGAQAKRDGTDLSETWRKAQAYAWEIAADYSS HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC PVIRSADFLFSHVWNRIYAGVLVHHVDSFKEISPGHEIVYVPSHRSHMDYLLLSYCLYKC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH SIGLPHIVAGINLNLPVVGTLLRKCGAFFIRRSIKGNMLYSVVLSEYVAQLVAGGYSLEY CCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEE FIEGGRSRTGRLLQPKGGMIMMTVQAFLRQPRRPVLFQPIYIGYEKLMEGTSYLDELSGE EEECCCCCCCCEECCCCCEEEHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCC PKKKESIWRVFWNIPKVLKQKYGQVVVNFGEPIALNDVLAELAPEWEGQALNENEKPAWL CCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH SSTVNHLARQIQTRINSAADVNPINLLALALLSTPKHAMGEADLIAQITLCKKILLELPY HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHCCC SNRVTITPHTPERIIAHAEQINILTRVHHPLGDVLRVDGDNAVLLSYFRNNVLHLFTASA CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHCCHHHHHHHHH WVACCFKNNRRMSRIALIRLGVGMYPFLQAELFLPWTEDQFAQHIQQVIELFVREGLLLS HHHHHHHCCCCHHHHHHHHHCCCCCHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCEEEE AGNEEEDPLTRNTSQTDEVFRLRAISHSLQQAFERYYITISILVKNGPGTLSASELESLC CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHH QLAAQRLSLLYASTAPEFFDKGLFRGFIQKLRELNLVWPDTYSKLLFDERLDTSAKDAQV HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHH ILGRELRHTIERISPEATKPAPK HHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PKKNSPLLPKETTTTQSSVDTSGSSNLTWPVSEHTIRRPLWARLLGQILDPWLDLSIEP CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCHHHCCCCCC EHSVQYNDGRPIIYVLEDYGLCNTLILDKACRKTKLPSPLIPLSGNPLQRKRAYLALSRR CCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC SSSNSLIPNQRGGKTHSDSLANLLQAHRIRDTLDVHLVPVSIFIGRTPDRQSGWFAVLFS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCCEEEEEEE ENWALVGRFRRILAILLNGRNTIVCFAPPISVRQTLNEGLPPERTLRKLQRVLRTHFRRI CCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RETVIGPDLSTRRLLVDNVLATEAVREAIGAQAKRDGTDLSETWRKAQAYAWEIAADYSS HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC PVIRSADFLFSHVWNRIYAGVLVHHVDSFKEISPGHEIVYVPSHRSHMDYLLLSYCLYKC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH SIGLPHIVAGINLNLPVVGTLLRKCGAFFIRRSIKGNMLYSVVLSEYVAQLVAGGYSLEY CCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEE FIEGGRSRTGRLLQPKGGMIMMTVQAFLRQPRRPVLFQPIYIGYEKLMEGTSYLDELSGE EEECCCCCCCCEECCCCCEEEHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCC PKKKESIWRVFWNIPKVLKQKYGQVVVNFGEPIALNDVLAELAPEWEGQALNENEKPAWL CCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH SSTVNHLARQIQTRINSAADVNPINLLALALLSTPKHAMGEADLIAQITLCKKILLELPY HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHCCC SNRVTITPHTPERIIAHAEQINILTRVHHPLGDVLRVDGDNAVLLSYFRNNVLHLFTASA CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHCCHHHHHHHHH WVACCFKNNRRMSRIALIRLGVGMYPFLQAELFLPWTEDQFAQHIQQVIELFVREGLLLS HHHHHHHCCCCHHHHHHHHHCCCCCHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCEEEE AGNEEEDPLTRNTSQTDEVFRLRAISHSLQQAFERYYITISILVKNGPGTLSASELESLC CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCHHHHHHHH QLAAQRLSLLYASTAPEFFDKGLFRGFIQKLRELNLVWPDTYSKLLFDERLDTSAKDAQV HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHH ILGRELRHTIERISPEATKPAPK HHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]