Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is 182680870
Identifier: 182680870
GI number: 182680870
Start: 392512
End: 392841
Strand: Reverse
Name: 182680870
Synonym: XfasM23_0307
Alternate gene names: NA
Gene position: 392841-392512 (Counterclockwise)
Preceding gene: 182680872
Following gene: 182680869
Centisome position: 15.49
GC content: 57.27
Gene sequence:
>330_bases ATGAGCATCAACAAACTACTGATCGCACTGGCGATGGGTGCAACCCTTGCTGCGTGCGGCTCAAAAACACCAGAAACGCC ACCGACCCAGGATCCTAATCCTGCTAGTAATCCTGCAGCCAATGAGGCTCAAGCTGCCGCCGATCAGGCTGCTGCCAATC CACCTGCTGACGCAACCCCAGCTGCCGCCGATACTACTGCTGCTGCTGCCAACACAGCAGCTAATGCCGCTGCAACCGCA ACTCCTCCAGCAGACGCTGCCAAGCAATCTGGAGCAGCTCCTGCCACTCCTGCCACCAAGGCGAAAAACCCTGCAGAACA GAAGAAGTAA
Upstream 100 bases:
>100_bases GAAACTGAATGCGCATATACTTGACACCCGAATCTTGGTCGTCATCATGTTGGGCGCGCGCATCTTGCGCGTTGCCTAAC TAACGACGAGGATTGAACGA
Downstream 100 bases:
>100_bases TCCTTCTTCAGTACTTCATGTGTTCGGAAAAGCCGCTGGTTTGCCAGCGGCTTTTCCTTTGCTTAGCAGTGACCGTATAC AACCATGAGTCTTTGCCTAC
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MSINKLLIALAMGATLAACGSKTPETPPTQDPNPASNPAANEAQAAADQAAANPPADATPAAADTTAAAANTAANAAATA TPPADAAKQSGAAPATPATKAKNPAEQKK
Sequences:
>Translated_109_residues MSINKLLIALAMGATLAACGSKTPETPPTQDPNPASNPAANEAQAAADQAAANPPADATPAAADTTAAAANTAANAAATA TPPADAAKQSGAAPATPATKAKNPAEQKK >Mature_108_residues SINKLLIALAMGATLAACGSKTPETPPTQDPNPASNPAANEAQAAADQAAANPPADATPAAADTTAAAANTAANAAATAT PPADAAKQSGAAPATPATKAKNPAEQKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10340; Mature: 10209
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSINKLLIALAMGATLAACGSKTPETPPTQDPNPASNPAANEAQAAADQAAANPPADATP CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC AAADTTAAAANTAANAAATATPPADAAKQSGAAPATPATKAKNPAEQKK CCCCCHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SINKLLIALAMGATLAACGSKTPETPPTQDPNPASNPAANEAQAAADQAAANPPADATP CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC AAADTTAAAANTAANAAATATPPADAAKQSGAAPATPATKAKNPAEQKK CCCCCHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA