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The map label for this gene is secF

Identifier: 182680741

GI number: 182680741

Start: 233557

End: 234522

Strand: Direct

Name: secF

Synonym: XfasM23_0170

Alternate gene names: 182680741

Gene position: 233557-234522 (Clockwise)

Preceding gene: 182680740

Following gene: 182680742

Centisome position: 9.21

GC content: 50.62

Gene sequence:

>966_bases
ATGAAATTATTCCCGCTGCATCTCATTCCGAACGACACCAAGATCGACTTCATGCGCTGGCGTAAACCGACGTTGAGTTT
GATGTCGATACTTTTTGCAATATCAGTCTTGGTTGTCGTTTTTAAGGGATTTAACTATGCGCTGGAATTTACCGGCGGCA
CGCTAGTGCGTACTCAGTTCGCCAAGCCTGTGGATGCCGATCAGGTGCGTCAGCGGCTGGAGGTTGGTGGTTTAGGGAAT
GCACAGGTACAGAGCGTCGGGGGTGGCAACGAGTTGCTGATCCGTTTGCAGCCGTATGGCGAGCATAATAACGATGATGT
GGCCAAAAACGCTGCCGAAGCTGTGCGCAAAGTGATTACGTTGCCGGATAATCCGGCAACTGTACAGCCTGGGGAATTCG
TTGGTCCACAGGTGGGAAAAGATCTCGCGATGAATGGTGTATACGCAACGATCTTTATGCTGTTGGGTTTTTTGATTTAT
ATCGGGTTTCGGTTTGAGTGGAAGTTTGCGGTTGCAGCCAGTCTAACGGCGTTCTTCGATCTGATTTTGACGATCGCTTA
TATGTCGCTGCTTGGTCGGGAGTTCGACTTGACTGTTCTGGCTGGCTTGTTGTCTGTGATGGGTTTTGCGATCAATGACA
TCATTGTGGTGTTTGACCGTGTGCGTGAGAACTTCCGTAGCCTGCGTGTGGAGCCGTTAGAGGTGTTGAATCGTTCGATC
AATCAGACGCTATCTCGTACGGTGATTACGGCGGTCATGTTCTTTCTGTCGGCGTTTGCGTTGTACTTGTACGGCGGCCG
CTCAATGGAGGGGTTGGCTGAAACCCATATGGCTGGTGCGGTGATTGTGGTGGTGTCTTCAGTGGTTATGGCGGTGCCAT
TGTTAACCATTGGCCCTTTAAAGGTCAGTAAGCAAGATTTGCTGCCGAAGGCGAAAGACCTGGAGTCATTGGAGCGCCGT
CCTTAA

Upstream 100 bases:

>100_bases
TTTACTGCGATTACGGTATCGCGTTCGCTCTCTGCGCTGATTTACGGTACGCGCAACAATCTCAAGTCTTTGGCTATCTG
ACCGGGAAGAGAACAACATT

Downstream 100 bases:

>100_bases
TGATTTTCTACATGGCTTCATTTGTGAAGGTGGGCTGTGGAAGGGCAGTTTAGCGGTCACTGTCATGGGAAGGGTAGTGC
ACACCTTGTGGCTACTCTAC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKLFPLHLIPNDTKIDFMRWRKPTLSLMSILFAISVLVVVFKGFNYALEFTGGTLVRTQFAKPVDADQVRQRLEVGGLGN
AQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVITLPDNPATVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIY
IGFRFEWKFAVAASLTAFFDLILTIAYMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSLRVEPLEVLNRSI
NQTLSRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAGAVIVVVSSVVMAVPLLTIGPLKVSKQDLLPKAKDLESLERR
P

Sequences:

>Translated_321_residues
MKLFPLHLIPNDTKIDFMRWRKPTLSLMSILFAISVLVVVFKGFNYALEFTGGTLVRTQFAKPVDADQVRQRLEVGGLGN
AQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVITLPDNPATVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIY
IGFRFEWKFAVAASLTAFFDLILTIAYMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSLRVEPLEVLNRSI
NQTLSRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAGAVIVVVSSVVMAVPLLTIGPLKVSKQDLLPKAKDLESLERR
P
>Mature_321_residues
MKLFPLHLIPNDTKIDFMRWRKPTLSLMSILFAISVLVVVFKGFNYALEFTGGTLVRTQFAKPVDADQVRQRLEVGGLGN
AQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVITLPDNPATVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIY
IGFRFEWKFAVAASLTAFFDLILTIAYMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSLRVEPLEVLNRSI
NQTLSRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAGAVIVVVSSVVMAVPLLTIGPLKVSKQDLLPKAKDLESLERR
P

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=306, Percent_Identity=36.2745098039216, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35447; Mature: 35447

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFPLHLIPNDTKIDFMRWRKPTLSLMSILFAISVLVVVFKGFNYALEFTGGTLVRTQF
CCEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECC
AKPVDADQVRQRLEVGGLGNAQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVIT
CCCCCHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHC
LPDNPATVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIYIGFRFEWKFAVAASLTAFFD
CCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
LILTIAYMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSLRVEPLEVLNRSI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NQTLSRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAGAVIVVVSSVVMAVPLLTIGPL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KVSKQDLLPKAKDLESLERRP
CCCHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKLFPLHLIPNDTKIDFMRWRKPTLSLMSILFAISVLVVVFKGFNYALEFTGGTLVRTQF
CCEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECC
AKPVDADQVRQRLEVGGLGNAQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVIT
CCCCCHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHC
LPDNPATVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIYIGFRFEWKFAVAASLTAFFD
CCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
LILTIAYMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSLRVEPLEVLNRSI
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NQTLSRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAGAVIVVVSSVVMAVPLLTIGPL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KVSKQDLLPKAKDLESLERRP
CCCHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]