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The map label for this gene is secD

Identifier: 182680740

GI number: 182680740

Start: 231693

End: 233537

Strand: Direct

Name: secD

Synonym: XfasM23_0169

Alternate gene names: 182680740

Gene position: 231693-233537 (Clockwise)

Preceding gene: 182680739

Following gene: 182680741

Centisome position: 9.14

GC content: 50.62

Gene sequence:

>1845_bases
ATGCTTGAATTACCCCGTTGGAAATATGTTCTTATTTTTGTTGTGCTTGTGTTGAGCACGCTGTACGCGTTACCAAACGT
GTATCAGAAAGATCCTTCCGTGCAGATTACCGCCAATCGAGGCGGCCATATCGACGATGCATTCCGCCAGCAGGTGATGA
CTGATCTTCAAGCATCCGGCATTGTGCCTAAGGCCGTGACCAAGGAGGGGGAGAGCCTGATGGTGCGCTTGATGTCGTTG
GAGATGCAGACCCGTGCCAGCGATGTGTTGCGGGCTAAGGTGGGTGAGAATTACACCGTTGCATTGAATCTCGCTTCCAC
TGTGCCAGATTGGTTGGCTAAGTTGGGTGGGCGACCGATGGTGTTAGGTTTGGATCTGGTTGGCGGTGTGCATTTCGCGC
TTCAGGTGGATCAGAAGGCCGCTCTGAATAAACGTATGGATGCTTTTGTTGAGGAGGTACGTTCGACGTTGGGTAGCAAG
CGTATTGGCTTCCGCATGGTCGAACGCCGTCCGGACAACACGATTCGAGTGACGTTTGATGATGATGCTCATCTCAATGA
AGCACGTATGGTGTTGTTTAAGGAGCAAGTGGGGCTGAGTTATTCGGTATCCGGAAATACTTTGATTGCTCGTGTTTCTG
AGAATGAGTTGCGTCAGATTGCCAGTGGTGCGGTTGAGCAAAATTTGACGACTCTGCGTAATCGCATCAATGAATTAGGC
GTGGCCGAACCAATTATCCAACGTCAGGGGGATGATCGTATTGTTGTTGAGTTGCCTGGTGTTCAGGATACTGCTGAGGC
TAAACGTCTGATAGGTGCGACTGCTACGCTGGAGTTTCGGGGTGTGGTCGACGGTGATGCCTATGAGGCAGTCCGTACTG
GGAATGTTCCTCCTGAGGCCAGGGTGTATTACATACGCGGCACCAACCAGCCAGTTTTATTGAATAAGCGTGTGATTGTT
TCTGGTGATGAGATGGTGAATGCCACTGTCGGTGTGGATGAGAACGGCATGCCAGCGGTCAATGTCACCCTCAGTAATGC
TGCTGGTCAGCGTATGTTGGACTACACCCAGCGCAACCTTTACAAGCTGATGTCTGTGGTCTACATCGAGCGTATTCCGA
CTGTGAGCATGGTTGATGGTAAGGAAGTGCGTGGCGTGCGGTTGAAGGAAGAGGCATTGTCCCCAACACGGATTGCTGGG
GTATTTGGAAAAAACTTCCGTACCACCGGGTTGGAGAAGACTGAGGCTGAAAATCTGTCTAAATTGTTGCGCGCTGGTTC
GTTGGCTGCACCGATGGATTTCGTTGAGGAATATGTGATCGGTCCTAGTTTGGGTGCAGAGAATGTAGAACGTGGTGTGA
CTGCAGTGGTGTTTTCTTTCTTATTCACCCTGGTGTTTTTCACCATCTATTACCGCATGTTTGGTGTGATTACTTCATTG
GCATTGCTGTTTAATCTGTTGATTGTGGTAGCTGTGATGTCGCTGTTTGGTGCAACCATGACTTTGCCGGGTTTTGCCGG
GTTGGCGCTGTCGGTCGGGCTTTCGGTGGATGCTAACGTGTTGATCAACGAGCGTATCCGTGAGGAGTTGCGTCACGGGA
TGCCTCCGAGATCGGCGATTGTGGCCGGTTACGACAAGGCGGGTAGCACGATTCTTGATGCCAATTTGACCGGACTGATT
GTTGGTGTTGCCTTGTATGCTTTCGGAACCGGTCCTTTGAAGGGCTTTGCGTTGACTATGATTATCGGGATTTTCGCCTC
AATGTTTACTGCGATTACGGTATCGCGTTCGCTCTCTGCGCTGATTTACGGTACGCGCAACAATCTCAAGTCTTTGGCTA
TCTGA

Upstream 100 bases:

>100_bases
GTTGCCCAAAGGCTCGTTGCCGTCGGCAAAATGATGTCTATCTCCTTTGTGATTTTCCTAGGGTGCGATGCTGTAGCTGG
TGTCGCCCGAGACTTGCGCA

Downstream 100 bases:

>100_bases
CCGGGAAGAGAACAACATTATGAAATTATTCCCGCTGCATCTCATTCCGAACGACACCAAGATCGACTTCATGCGCTGGC
GTAAACCGACGTTGAGTTTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MLELPRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMTDLQASGIVPKAVTKEGESLMVRLMSL
EMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSK
RIGFRMVERRPDNTIRVTFDDDAHLNEARMVLFKEQVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELG
VAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVLLNKRVIV
SGDEMVNATVGVDENGMPAVNVTLSNAAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAG
VFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSL
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLI
VGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLKSLAI

Sequences:

>Translated_614_residues
MLELPRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMTDLQASGIVPKAVTKEGESLMVRLMSL
EMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSK
RIGFRMVERRPDNTIRVTFDDDAHLNEARMVLFKEQVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELG
VAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVLLNKRVIV
SGDEMVNATVGVDENGMPAVNVTLSNAAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAG
VFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSL
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLI
VGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLKSLAI
>Mature_614_residues
MLELPRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMTDLQASGIVPKAVTKEGESLMVRLMSL
EMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSK
RIGFRMVERRPDNTIRVTFDDDAHLNEARMVLFKEQVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELG
VAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVLLNKRVIV
SGDEMVNATVGVDENGMPAVNVTLSNAAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAG
VFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSL
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLI
VGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLKSLAI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=617, Percent_Identity=44.5705024311183, Blast_Score=482, Evalue=1e-137,
Organism=Escherichia coli, GI1786610, Length=166, Percent_Identity=31.3253012048193, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66979; Mature: 66979

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELPRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMTDLQASG
CCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
IVPKAVTKEGESLMVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPM
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCE
VLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSKRIGFRMVERRPDNTIRVTFD
EEEEEHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEEC
DDAHLNEARMVLFKEQVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELG
CCCCCCHHHHEEEHHHCCCEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEA
CCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCEEEEEEEEEECCCHHHHHHCCCCCCCC
RVYYIRGTNQPVLLNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNAAGQRMLDYTQRNL
EEEEEECCCCCEEEECEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH
YKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAGVFGKNFRTTGLEKTEAENLS
HHHHHHHHHHHCCCEEEECCCCCCCEEEHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
KLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSL
HHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAI
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCHHE
VAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSA
EECCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LIYGTRNNLKSLAI
EEEECCCCCHHCCC
>Mature Secondary Structure
MLELPRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMTDLQASG
CCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
IVPKAVTKEGESLMVRLMSLEMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPM
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCE
VLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSKRIGFRMVERRPDNTIRVTFD
EEEEEHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEEC
DDAHLNEARMVLFKEQVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELG
CCCCCCHHHHEEEHHHCCCEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEA
CCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCEEEEEEEEEECCCHHHHHHCCCCCCCC
RVYYIRGTNQPVLLNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNAAGQRMLDYTQRNL
EEEEEECCCCCEEEECEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH
YKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAGVFGKNFRTTGLEKTEAENLS
HHHHHHHHHHHCCCEEEECCCCCCCEEEHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
KLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSL
HHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAI
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCHHE
VAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSA
EECCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LIYGTRNNLKSLAI
EEEECCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]