Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 182680670

GI number: 182680670

Start: 136277

End: 137362

Strand: Direct

Name: lptF [H]

Synonym: XfasM23_0099

Alternate gene names: 182680670

Gene position: 136277-137362 (Clockwise)

Preceding gene: 182680664

Following gene: 182680671

Centisome position: 5.37

GC content: 55.43

Gene sequence:

>1086_bases
ATGCCGAAGCTAGACCGCTATCTGTTGAGCGATTTTACTCAGAGTTTCATTGCAACTTTGATTGTGCTGATGCTGGTTGG
GGTGGGTGGTGTGTTGGTCGATATTCTGGGGAGCATTGCCGATGGCCATTTTCCGGCCAAGCTGCTGTTGTCCCAGCTTG
GCCTGCGGTTCATTAGTTATCTTCCGCTGCTCTTGCCGCTGGCGTTGATGTTGGGGTTGCTGATGTCGCTGGGCCGGTTG
TATCGGGATTCGGAAATGGCGGTCATCACTTCAATTGGTGTTGGCCCTGGGCGGATGTTGCCGTCAATTCTGGGGTTGGT
GTTGCCTGTGGTCGTGCTGATCGGTGTGTGTTCGTTGTGGTTGGCGCCTTGGGCCAATCGCACCGCCAATGATCTGCTGG
AGCAGGCCAATCGCAGCATTATCATGGCCGGTCTTGAGGCGGGGACGTTTACTCCGATGCCTGATGGGGGTGTGGTTTAT
TTATCTTCGCTTTCCTCTGATGGTACTAAGCTCAATGCGGTGTTCATGCAAAGTCAGAAGGACGACCGGATAGCGGTTGT
CACTGCTAAGCGTGGTGAGATGTATGTGCAGGGGGATAAGGGGCGTTATTTGCGTCTGGAGGATGGGCAACGCGTGGATG
GGCCTGCCGATGGTGCTGCGCTGAATTACCGTGTGCTGACTTTTGCGCGCAATGATGCGTTGTTGCCTGAGCTGTCCGTG
GTGTATGACAGCAATCATCCCGATATTTTACCCACGTTCAATTTGATCGGTGATCCGCGTCGCGAGGCGCAGGCGCAGTT
GCATGCACGGCTTGCGCCTCCATTGTTGGCATTGGCATTTGCGTTGTTGGTATTGCCGCTGTCACGCAGCGCTCCGCGTC
AGCAACGCTATGGGGCTGTCATGATGTGTTTCTTGGTCTACATGGTGGGCACCAATCTGATGATTGTCGGTACTCAGTGG
ATCGCCAACGGCAAGATTTCTCCTGTGTGGGGCTTGTGGTGGCTGACGTTGCCGCTGCTGTTGGTGGCAGTATGTTTGTA
TGCCCGCGGTGGCTGCTGGATGCCGTGGCCGCGGAGAAGCCGATGA

Upstream 100 bases:

>100_bases
ATTCCTGTTGCGAGTCCTTACAATCGCGGAGTTTGTCGCCGCTTGGGTTATCTTGGCGGCTGCCGCGAACGAGCTTACAA
GTCTAAAGCAACCACATTCT

Downstream 100 bases:

>100_bases
AACTATTTCCATGTTTGCATGATCGTTACGTTGCGCGTGCTGTCGTTGCTACGGTGTTGTTGACATGGTTGGTGTTGTTG
GGTCTGGATGTGGTGAATGG

Product: permease YjgP/YjgQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISYLPLLLPLALMLGLLMSLGRL
YRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVY
LSSLSSDGTKLNAVFMQSQKDDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSV
VYDSNHPDILPTFNLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPRQQRYGAVMMCFLVYMVGTNLMIVGTQW
IANGKISPVWGLWWLTLPLLLVAVCLYARGGCWMPWPRRSR

Sequences:

>Translated_361_residues
MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISYLPLLLPLALMLGLLMSLGRL
YRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVY
LSSLSSDGTKLNAVFMQSQKDDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSV
VYDSNHPDILPTFNLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPRQQRYGAVMMCFLVYMVGTNLMIVGTQW
IANGKISPVWGLWWLTLPLLLVAVCLYARGGCWMPWPRRSR
>Mature_360_residues
PKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISYLPLLLPLALMLGLLMSLGRLY
RDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLWLAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYL
SSLSSDGTKLNAVFMQSQKDDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSVV
YDSNHPDILPTFNLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPRQQRYGAVMMCFLVYMVGTNLMIVGTQWI
ANGKISPVWGLWWLTLPLLLVAVCLYARGGCWMPWPRRSR

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=349, Percent_Identity=30.6590257879656, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 39499; Mature: 39368

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LPLLLPLALMLGLLMSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK
HHCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCC
DDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSV
CCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEE
VYDSNHPDILPTFNLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPRQQRYGAV
EECCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
MMCFLVYMVGTNLMIVGTQWIANGKISPVWGLWWLTLPLLLVAVCLYARGGCWMPWPRRS
HHHHHHHHHCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
R
C
>Mature Secondary Structure 
PKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LPLLLPLALMLGLLMSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK
HHCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCC
DDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSV
CCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEE
VYDSNHPDILPTFNLIGDPRREAQAQLHARLAPPLLALAFALLVLPLSRSAPRQQRYGAV
EECCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
MMCFLVYMVGTNLMIVGTQWIANGKISPVWGLWWLTLPLLLVAVCLYARGGCWMPWPRRS
HHHHHHHHHCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]