Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is lptG [H]
Identifier: 182680671
GI number: 182680671
Start: 137359
End: 138465
Strand: Direct
Name: lptG [H]
Synonym: XfasM23_0100
Alternate gene names: 182680671
Gene position: 137359-138465 (Clockwise)
Preceding gene: 182680670
Following gene: 182680673
Centisome position: 5.42
GC content: 53.57
Gene sequence:
>1107_bases ATGAAACTATTTCCATGTTTGCATGATCGTTACGTTGCGCGTGCTGTCGTTGCTACGGTGTTGTTGACATGGTTGGTGTT GTTGGGTCTGGATGTGGTGAATGGTTTTGCCAGTGAGGTACGCGACATCGGCAAGGGCAGTTACAGTTTTGGTCATGCGA TTGCTTATATCGCTTACACGGTGCCGCGCCGTGCTTATACGTTATTTCCAACTGCAGCAGTGATTGGGATGTTGCTAGGG TTGGGCCAGTTGGCGGCTACCTCCGAGTTAACGGCGCTGCGTGCGCTGGGGGTCTCGCGCACGCGGTTGAGTCTGTCGGT GATGATGATGATTGGGATGGGCACTGGGCTGATGGTGCTGACTGGGGAGACGCTGGGTCCTTGGGCGCAAGCCCAAGCAG ACATATTGAAGGCCAGTGCTAAGTACAAGAGCGATATGACCGGGGCGCGTTATTCCGGTTTTTGGGCGCGTGAGGGTGAG GTGTTTCTCAATGCGCGTAGTGGTGAGGAGAAACGCCTGGATAGCGGCGGCATCATGTTGATATTGCATGATGTGCGTTT GTATCAGTTGGCTGCCGATGGGCGGTTGCAAAGTATGACGCGTGCTGCTCGGGTGGAACATCATCAGGATGTTTGGATAC TTCAGCAGGTGCAACGGGATACGTTCAGTGAACGTGGGGTGCAGCGTGAGACCTTCGACAGTTTGCCTTGGCGATCACGG CTTGATCCGGCGGTGCTTGCGGCGGGTTTGGCGAAGCCACGTAATCTGTCTGCGCACGAGCTTGTGCAAAGCATTGAGTA CCGGCGCCGTAATCACTTGGATGCGCGCGATTTCGAGGGGCAGTACTGGAGTCGCTGGTTTTACCCGGTCAATGTGTTGG CGCTGTGTTTGGCAGCGATTCCGTTTTCTTTCGGTCTGCTACGTAGTGGCGGTATGGGTAAGCGGACGTTCTTAGGTATT TTGTTTGCGCTGAGTTTTTGGATGTTGCAGATGTTTTTTGAGCGCATTGCCAGTGTGCTCAAGCTCAATTACCAGATTTT TTATTTATTGCCTCCAATGGTGATGTTGTGCGGGTCGTATTGGTTGTTCCGGCGGCAGCATCGTTGA
Upstream 100 bases:
>100_bases CTGTGTGGGGCTTGTGGTGGCTGACGTTGCCGCTGCTGTTGGTGGCAGTATGTTTGTATGCCCGCGGTGGCTGCTGGATG CCGTGGCCGCGGAGAAGCCG
Downstream 100 bases:
>100_bases GCGGTTGTGTTGGTGAGTGGCGTGGTAATCGTTCTAGGCGGGTTCGACTTGCGCGGTCGTGCCAGGTGCGGCCATCAGGG TCCAACCATCCCCACCAGAA
Product: permease YjgP/YjgQ family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYTVPRRAYTLFPTAAVIGMLLG LGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVLTGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGE VFLNARSGEEKRLDSGGIMLILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSR LDPAVLAAGLAKPRNLSAHELVQSIEYRRRNHLDARDFEGQYWSRWFYPVNVLALCLAAIPFSFGLLRSGGMGKRTFLGI LFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSYWLFRRQHR
Sequences:
>Translated_368_residues MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYTVPRRAYTLFPTAAVIGMLLG LGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVLTGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGE VFLNARSGEEKRLDSGGIMLILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSR LDPAVLAAGLAKPRNLSAHELVQSIEYRRRNHLDARDFEGQYWSRWFYPVNVLALCLAAIPFSFGLLRSGGMGKRTFLGI LFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSYWLFRRQHR >Mature_368_residues MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYTVPRRAYTLFPTAAVIGMLLG LGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVLTGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGE VFLNARSGEEKRLDSGGIMLILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSR LDPAVLAAGLAKPRNLSAHELVQSIEYRRRNHLDARDFEGQYWSRWFYPVNVLALCLAAIPFSFGLLRSGGMGKRTFLGI LFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSYWLFRRQHR
Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptF/lptG family [H]
Homologues:
Organism=Escherichia coli, GI87082400, Length=371, Percent_Identity=30.4582210242588, Blast_Score=134, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005495 [H]
Pfam domain/function: PF03739 YjgP_YjgQ [H]
EC number: NA
Molecular weight: Translated: 41547; Mature: 41547
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVL CCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIML ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCHHHCCCCCEEE ILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSR EEEHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC LDPAVLAAGLAKPRNLSAHELVQSIEYRRRNHLDARDFEGQYWSRWFYPVNVLALCLAAI CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH PFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSY HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHCCH WLFRRQHR HHHHHCCC >Mature Secondary Structure MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVL CCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIML ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCHHHCCCCCEEE ILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSR EEEHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC LDPAVLAAGLAKPRNLSAHELVQSIEYRRRNHLDARDFEGQYWSRWFYPVNVLALCLAAI CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH PFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSY HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHCCH WLFRRQHR HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]