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The map label for this gene is yggS [H]

Identifier: 17547402

GI number: 17547402

Start: 2892076

End: 2892798

Strand: Direct

Name: yggS [H]

Synonym: RSc2683

Alternate gene names: 17547402

Gene position: 2892076-2892798 (Clockwise)

Preceding gene: 17547392

Following gene: 17547403

Centisome position: 77.82

GC content: 71.09

Gene sequence:

>723_bases
ATGTCTGTAATCGCCGCCAACTTGCAAGCCGTGCGTCAGCGGATCACAACGGCCTGCACATTGGCTTCGCGCGATCCGGC
CAGTGTCACGCTACTGGCCGTTTCCAAGACCTTCGACGCCGACGCCGTACGCGCCGCCCATGCCGCCGGGCAACGCCTGT
TCGGCGAGAACTACGTACAGGAAGGCACCGCCAAGACCAGCGCCCTGACCGACCTGCGCAACGGCCCCGAGGCGATCGCC
TGGCACTTCATCGGGCCCCTGCAGAGCAACAAGACGCGCGCGGTGGCCGAGCACTTCGACTGGGTGCACAGCATCGACCG
GCTGAAGATCGCCGAGCGGCTGTCCGCCCAGCGCCCCGCCACCCTGCCGCCACTGCAGGTCTGCCTGGAAATCAACATCA
GCCGGCAGGCCAGCAAGCACGGCGTACCGCCCGACCTGGACGAGGTGCTGCCCCTGGCGCGCGCTGTCGCCGCCCTGCCC
CGGCTGCGGCTGCGCGGGCTGATGGCCGTGCCTGAGCCGGCCGACGACCCGGCGGCCCGGCGCGCGCCCTTCGCTGCACT
GCGCGACCTGGCCGACCGGCTGTGCGCGGCGGGCCTGCCCGTCGATACGCTGTCGATGGGCATGTCCGCCGACCTGGAAG
ACGCGATCGCGGAGGGCGCCACCATCGTGCGCGTCGGCAGCGCCATCTTCGGCGCGCGGCAGTATGCGCATGCGCCCGCC
TGA

Upstream 100 bases:

>100_bases
TGTCGCCCGCACTGCGCAAAAGCGCCGCCGGGCATGCTCCGGACTGCCACGATGGCAGGGTTGTTGGAGCCTTGTTTTTT
TGTAACAAACTCGCCGGATT

Downstream 100 bases:

>100_bases
TTCCCGCTTGACCCTTTCTCTATCGACCCTTCCCATGCTCGACACTCTGAAATTCGGCTTCATCGGCGGCGGCAACATGG
CTTCGGCGCTGATCGGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQEGTAKTSALTDLRNGPEAIA
WHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPATLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALP
RLRLRGLMAVPEPADDPAARRAPFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQYAHAPA

Sequences:

>Translated_240_residues
MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQEGTAKTSALTDLRNGPEAIA
WHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPATLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALP
RLRLRGLMAVPEPADDPAARRAPFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQYAHAPA
>Mature_239_residues
SVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQEGTAKTSALTDLRNGPEAIAW
HFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPATLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALPR
LRLRGLMAVPEPADDPAARRAPFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQYAHAPA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=248, Percent_Identity=39.9193548387097, Blast_Score=143, Evalue=2e-34,
Organism=Escherichia coli, GI1789321, Length=241, Percent_Identity=55.1867219917012, Blast_Score=238, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17533025, Length=252, Percent_Identity=32.1428571428571, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=221, Percent_Identity=33.4841628959276, Blast_Score=108, Evalue=7e-25,
Organism=Drosophila melanogaster, GI45550861, Length=246, Percent_Identity=36.5853658536585, Blast_Score=118, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25546; Mature: 25414

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGTAKTSALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPA
HCCHHHHHHHHHCCCCHHEEHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALPRLRLRGLMAVPEPADDPAAR
CCCHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
RAPFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQYAHAPA
HCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EGTAKTSALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPA
HCCHHHHHHHHHCCCCHHEEHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALPRLRLRGLMAVPEPADDPAAR
CCCHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
RAPFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQYAHAPA
HCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCCEEEHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]