Definition Ralstonia solanacearum GMI1000, complete genome.
Accession NC_003295
Length 3,716,413

Click here to switch to the map view.

The map label for this gene is 17547373

Identifier: 17547373

GI number: 17547373

Start: 2856974

End: 2859013

Strand: Direct

Name: 17547373

Synonym: RSc2654

Alternate gene names: NA

Gene position: 2856974-2859013 (Clockwise)

Preceding gene: 17547372

Following gene: 17547376

Centisome position: 76.87

GC content: 70.25

Gene sequence:

>2040_bases
ATGAAGACGTTGGTTCCCGGGGGTATCGTCCGAGCGCTGGTTGCGCTCGGGCTGGTGTCGTATCAGGCCGTACCGGCTCT
GGCGACGGGCAAGACAGGCATGACGGATACACGGCTGCAATGGGTGACGCAGCTGATCGTTAAGGAAAAGAGCGCAACGG
GCAGTACGGCCAGGACGCAGTCGGTTGCCGCGGATGTGGCGACGGTGCAACGCTGGTCGGTCGCCGCCCAACTGCCCGTG
ACGTACAAGCGCGCCATGTCGGGCGGCGCGCATGTGGTGACGCTGTCGAAGGGGATGTCGGCGGCCGACGCGCAAACGAT
CGCGGCCCGCATGGAATCCAGCGGCCAGTTCGAGTACGTGTCGCCGGACACCATTCTGCGGCCCGCTGCCACGCCCACCG
ACCCCTGGTTCGCCAACCAGTGGAACCTGCTGCCCGCCACCGGTACGGTGAGCACCGTCACCACCCGCAGCGGCGCCACC
GCGGCCAACGGCGCCACCACCAAGGGCGGCGCCAACCTGACCACGGCGTGGGACACCACCAAGGGCTCGAACACCGTCAC
GGTCACGGTCATCGATACCGGGCTCCTCGCCGGCCACGCCGATCTGTCGGGGGCCACGATCCAGCCGGGCTACGACTTCG
TCAGCAGTACCGCGATGACCGGCACACCCGACCCCGTCACCAACCTGTCGATCCCCAGCGGCTTCGTGGAGAACGACGCG
ACCGCCGGCCGCGACAGCGATCCGACCGACCCCGGCGACTGGATCACCACCTCGGATGCCACGAACTACCCCAGCTTCTG
CGGCACCTCGGTGACGGACAGCAGTTGGCACGGCACCTTCGTCACCGGCCTGATCGCCGCCCAGCACAACGCCATCGGGG
TGGCCGGCGTGGCACCCGGCGTCAGCGTGCAGATGACGCGCGCAATAGGCAAATGCGGCGGCGCCAGCTCCGACATCCTC
GATGCGCTCACCTGGGCCGCTGGCGGCACCGTACCGGGCGTGACGACGAATGCAACGCCCGCCAAGGTGATCAACATGAG
CCTGGGCGGCAGCACAGCGTGCACCACGGCACAGCAGAGCGCGATCACGGCGGCGCGCTCGCTCGGCGCGACCATCGTGG
TGGCGACCGGCAATGAGTTCCAGAATGCGGCGATCGACGCCCCGGCGAGCTGCTCGGGCACGATCGCGGTGACGGCCCAC
ACCCTCGAGGGCGACATCGCCAACTACGCCAACGTGGGAACGGGTACCACGCTGAGCGCCCCCGGCGGCGGCAACGGCTC
GACCGCCACAGGCCTCGGCGCCCTGGTGCCGTCGACGTCGAATGCCGGCACCACCACCGCCAGCACCGATACGTATGTGG
GCGAAGAAGGCACGTCGATGTCCACGCCGCAGGTGGCGGGCGTCGCCGCGCTGATGCTGTCCGTCAACGCCGCTCTGACG
CCGGACCAGATCAAGACCATCCTGCAGACGTCGTCCCGGCCGTTCCCGCCGGACACCTTCTGCACCACGCACGCGGGCGT
GTGCGGCGCCGGCATGCTCGACGCCGGCTCCGCCATCGCGCAGGCCCAGGGCGTGCCGACCGTGCATGCGTCGGTCTCTT
CGAGCTCGGTCACGACCGGCACGCAGGTCACCCTGCAGGCCGTGGGCGGCGCGGGCTTCGGCAAGACGGTCGGCAGCCTG
AGCTGGGCCCAGACCGCCGGCTCGGCGGTCACCCTCTCGGCCGGCAGCCTCGACTCGACCGGCAACGCTACCGCGACGTT
CACGCCCACGGATGCCGGCACGTACACCTTTACCGTTACGCTGGTCTCGAGCGACGGCACCACCGTAAGCGACACCACCA
GCCTGACGGTGACGGCGGCATCGACCTCGGGCGGCACCGGCGGCAGCACGGGCGGCAGCACCGGCACGCTCCCCTTCTCC
GGCGGCACCAGCGGCATTGGCCCGCTGAACAACGGCGGCGGCGGCCTGCTGCCGCTGTGGCTCGGCGGCCTGCTGCTGGC
GGCTGGCGCCCTCGGCTTCCAGCGCCGCAAGCGCGCTTGA

Upstream 100 bases:

>100_bases
CGACACCAGGGTTTACACCTAGTCCGTATTCGAGACACCGTTTCAAACCCTCCCTGACAATGCAGTCCGGATTTTTTGAC
ACAACAACAGGACTGCTCTC

Downstream 100 bases:

>100_bases
GCGCAGGGCGGGCACGCCGCACACCGGCGTGCCCGCCCATCCGACCGCCTGCCGGTCAGCCGCGCGCCCGCCTCCCCTGG
GCGCGCCATTCTCCCAGCAC

Product: serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 679

Protein sequence:

>679_residues
MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQSVAADVATVQRWSVAAQLPV
TYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYVSPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGAT
AANGATTKGGANLTTAWDTTKGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA
TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPGVSVQMTRAIGKCGGASSDIL
DALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQSAITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAH
TLEGDIANYANVGTGTTLSAPGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT
PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTGTQVTLQAVGGAGFGKTVGSL
SWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVTLVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFS
GGTSGIGPLNNGGGGLLPLWLGGLLLAAGALGFQRRKRA

Sequences:

>Translated_679_residues
MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQSVAADVATVQRWSVAAQLPV
TYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYVSPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGAT
AANGATTKGGANLTTAWDTTKGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA
TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPGVSVQMTRAIGKCGGASSDIL
DALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQSAITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAH
TLEGDIANYANVGTGTTLSAPGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT
PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTGTQVTLQAVGGAGFGKTVGSL
SWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVTLVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFS
GGTSGIGPLNNGGGGLLPLWLGGLLLAAGALGFQRRKRA
>Mature_679_residues
MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQSVAADVATVQRWSVAAQLPV
TYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYVSPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGAT
AANGATTKGGANLTTAWDTTKGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA
TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPGVSVQMTRAIGKCGGASSDIL
DALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQSAITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAH
TLEGDIANYANVGTGTTLSAPGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT
PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTGTQVTLQAVGGAGFGKTVGSL
SWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVTLVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFS
GGTSGIGPLNNGGGGLLPLWLGGLLLAAGALGFQRRKRA

Specific function: Unknown

COG id: COG1404

COG function: function code O; Subtilisin-like serine proteases

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S8 family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320775, Length=230, Percent_Identity=33.9130434782609, Blast_Score=77, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6324576, Length=234, Percent_Identity=29.4871794871795, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007280
- InterPro:   IPR000209
- InterPro:   IPR022398
- InterPro:   IPR015500 [H]

Pfam domain/function: PF00082 Peptidase_S8; PF04151 PPC [H]

EC number: NA

Molecular weight: Translated: 66889; Mature: 66889

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00136 SUBTILASE_ASP ; PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER ; PS50835 IG_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQ
CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
SVAADVATVQRWSVAAQLPVTYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYV
HHHHHHHHHHHHHEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
SPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGATAANGATTKGGANLTTAWDTT
CCCCEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCC
KGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA
CCCCEEEEEEEECCEEECCCCCCCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPG
CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHEEEHHHCCCCEEEEECCCC
VSVQMTRAIGKCGGASSDILDALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQS
CEEEHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
AITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAHTLEGDIANYANVGTGTTLSA
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCCEEEC
PGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCC
PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTG
HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCC
TQVTLQAVGGAGFGKTVGSLSWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVT
CEEEEEEECCCCCCHHHHCCHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEE
LVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFSGGTSGIGPLNNGGGGLLPLW
EEECCCCEEECCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHH
LGGLLLAAGALGFQRRKRA
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQ
CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
SVAADVATVQRWSVAAQLPVTYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYV
HHHHHHHHHHHHHEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
SPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGATAANGATTKGGANLTTAWDTT
CCCCEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCC
KGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA
CCCCEEEEEEEECCEEECCCCCCCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPG
CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHEEEHHHCCCCEEEEECCCC
VSVQMTRAIGKCGGASSDILDALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQS
CEEEHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
AITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAHTLEGDIANYANVGTGTTLSA
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCCEEEC
PGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCC
PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTG
HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCC
TQVTLQAVGGAGFGKTVGSLSWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVT
CEEEEEEECCCCCCHHHHCCHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEE
LVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFSGGTSGIGPLNNGGGGLLPLW
EEECCCCEEECCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHH
LGGLLLAAGALGFQRRKRA
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187155; 12024217 [H]