BacMap

Definition	Ralstonia solanacearum GMI1000, complete genome.
Accession	NC_003295
Length	3,716,413

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The map label for this gene is cbiO1 [H]

Identifier: 17547351

GI number: 17547351

Start: 2834171

End: 2834857

Strand: Direct

Name: cbiO1 [H]

Synonym: RSc2632

Alternate gene names: 17547351

Gene position: 2834171-2834857 (Clockwise)

Preceding gene: 17547350

Following gene: 17547359

Centisome position: 76.26

GC content: 72.78

Gene sequence:

>687_bases
ATGACCACCTCGCCCCGCCCCCTGATGGTGTTCGAACAGCTGCACTGCCGCCACGGCGAGCGCCTGCTGTTCGACATTCC
GCGCCTGGCGCTGTCGGCGGGCAACGCGGTGGTCATCACGGGCGCCAACGGCGTCGGCAAGACCACGCTGCTGCGCATGC
TGGCGGGCCTGGTGCCGGCGGCGGAAGCCTGCGTCGATTTCGGCCGGGGCCCGCAGCCGCTGTCCCCTTACCCGGCCGCG
CTGCGGGCGCGGCTCACCTATGTGCACCAGCATCCGTACCTGTTCCGCACCTCGGTGCGGGACAACCTTGCCTACGGACT
GACCACCGGCCCGCATCGCGTGCCGCGGGCGGAGTTGCGCGAGCGCGTCGACGATGCCATCCGCTGGGCCGGCCTGCAGC
AGGTGCTGCATGTGCCGCCGGAGCGCCTGTCGGGCGGCGAGGCGCAACGCCTCGCGCTGGCGCGTGCCCGCGCGCTGCGC
ACCGATGTGCTGCTGCTCGATGAGCCCACCTCCAGCCTGGATGGCGCCGCGCGCGAACAGGTGCTCGCGCTGGTCGGCGA
ACTGGCGGCCGAGGGCCGCGCGCTGCTGATGGTGTGCCACGACCGCGAGCTGATCAACCTGCCCGGCGTGACCCGGTGGA
AGCTAAGCGACGGGCGGCTCGAAATGCGCGGGCACCACGCCGCGTAG

Upstream 100 bases:

>100_bases
CTGGGCATCGTGCTGATCGCGCTGGCGCTGCTGGTCAACCTGGTGCTGGCGTGGCTGCAGGGCGCCGGCGCCTTCCGCCG
CCACACCGCATGAGCGCCCG

Downstream 100 bases:

>100_bases
CGCGTTGCAGACGGCGATGGCCTCGGCGCGGACGACGTCGGCACGGGTCAGCACGCGTTCATGCAAGGGCGCGCCGAGCC
ACGGCCGCGCGTCCTCCAGC

Product: ABC transporter ATP-binding protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTTSPRPLMVFEQLHCRHGERLLFDIPRLALSAGNAVVITGANGVGKTTLLRMLAGLVPAAEACVDFGRGPQPLSPYPAA
LRARLTYVHQHPYLFRTSVRDNLAYGLTTGPHRVPRAELRERVDDAIRWAGLQQVLHVPPERLSGGEAQRLALARARALR
TDVLLLDEPTSSLDGAAREQVLALVGELAAEGRALLMVCHDRELINLPGVTRWKLSDGRLEMRGHHAA

Sequences:

>Translated_228_residues
MTTSPRPLMVFEQLHCRHGERLLFDIPRLALSAGNAVVITGANGVGKTTLLRMLAGLVPAAEACVDFGRGPQPLSPYPAA
LRARLTYVHQHPYLFRTSVRDNLAYGLTTGPHRVPRAELRERVDDAIRWAGLQQVLHVPPERLSGGEAQRLALARARALR
TDVLLLDEPTSSLDGAAREQVLALVGELAAEGRALLMVCHDRELINLPGVTRWKLSDGRLEMRGHHAA
>Mature_227_residues
TTSPRPLMVFEQLHCRHGERLLFDIPRLALSAGNAVVITGANGVGKTTLLRMLAGLVPAAEACVDFGRGPQPLSPYPAAL
RARLTYVHQHPYLFRTSVRDNLAYGLTTGPHRVPRAELRERVDDAIRWAGLQQVLHVPPERLSGGEAQRLALARARALRT
DVLLLDEPTSSLDGAAREQVLALVGELAAEGRALLMVCHDRELINLPGVTRWKLSDGRLEMRGHHAA

Specific function: Part of the ABC transporter complex CbiONQ involved in cobalt import. Responsible for energy coupling to the transport system [H]

COG id: COG1122

COG function: function code P; ABC-type cobalt transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI255708477, Length=210, Percent_Identity=31.9047619047619, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI148612844, Length=210, Percent_Identity=31.9047619047619, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI9961250, Length=215, Percent_Identity=29.3023255813954, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI171184400, Length=230, Percent_Identity=30, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4505771, Length=210, Percent_Identity=29.0476190476191, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI9961252, Length=210, Percent_Identity=29.0476190476191, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI42741659, Length=219, Percent_Identity=29.6803652968037, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI9955963, Length=232, Percent_Identity=28.0172413793103, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI156105685, Length=198, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI21536378, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI42490749, Length=237, Percent_Identity=27.0042194092827, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI73747915, Length=150, Percent_Identity=34.6666666666667, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI73747917, Length=150, Percent_Identity=34.6666666666667, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=33.9901477832512, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=35.1598173515982, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788225, Length=194, Percent_Identity=34.5360824742268, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788761, Length=188, Percent_Identity=36.1702127659575, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87081709, Length=188, Percent_Identity=35.1063829787234, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786698, Length=201, Percent_Identity=31.8407960199005, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=33.1658291457286, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787029, Length=179, Percent_Identity=34.0782122905028, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790162, Length=212, Percent_Identity=31.1320754716981, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI48994943, Length=188, Percent_Identity=33.5106382978723, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1789873, Length=193, Percent_Identity=34.1968911917098, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786563, Length=199, Percent_Identity=31.6582914572864, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790467, Length=185, Percent_Identity=31.8918918918919, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787112, Length=205, Percent_Identity=33.6585365853659, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789032, Length=196, Percent_Identity=33.6734693877551, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786872, Length=164, Percent_Identity=35.9756097560976, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787500, Length=186, Percent_Identity=31.1827956989247, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787712, Length=194, Percent_Identity=31.4432989690722, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789751, Length=202, Percent_Identity=30.1980198019802, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786345, Length=178, Percent_Identity=37.6404494382022, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=32.6633165829146, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082267, Length=154, Percent_Identity=35.7142857142857, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1788165, Length=200, Percent_Identity=30.5, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786703, Length=185, Percent_Identity=35.6756756756757, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788210, Length=205, Percent_Identity=29.7560975609756, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787164, Length=195, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788450, Length=180, Percent_Identity=34.4444444444444, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788644, Length=228, Percent_Identity=31.140350877193, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786398, Length=196, Percent_Identity=31.1224489795918, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788053, Length=184, Percent_Identity=32.6086956521739, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787143, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787089, Length=203, Percent_Identity=30.5418719211823, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=29.6116504854369, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787113, Length=209, Percent_Identity=33.0143540669856, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790534, Length=204, Percent_Identity=30.3921568627451, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790739, Length=193, Percent_Identity=30.5699481865285, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786653, Length=185, Percent_Identity=30.2702702702703, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787105, Length=181, Percent_Identity=31.4917127071823, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788506, Length=183, Percent_Identity=30.0546448087432, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789593, Length=185, Percent_Identity=30.2702702702703, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789586, Length=214, Percent_Identity=31.7757009345794, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI48995001, Length=183, Percent_Identity=32.2404371584699, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787792, Length=174, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693107, Length=203, Percent_Identity=31.5270935960591, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789672, Length=200, Percent_Identity=27, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789962, Length=196, Percent_Identity=30.1020408163265, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787547, Length=167, Percent_Identity=31.7365269461078, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789864, Length=217, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI87081782, Length=177, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=178, Percent_Identity=31.4606741573034, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71996809, Length=215, Percent_Identity=30.6976744186047, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=30.0925925925926, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI193211015, Length=216, Percent_Identity=30.0925925925926, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI193209708, Length=205, Percent_Identity=29.2682926829268, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17541710, Length=206, Percent_Identity=28.1553398058252, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI115535101, Length=205, Percent_Identity=29.2682926829268, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=220, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193208177, Length=207, Percent_Identity=28.0193236714976, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=209, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71996550, Length=229, Percent_Identity=30.1310043668122, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=207, Percent_Identity=28.0193236714976, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=233, Percent_Identity=27.8969957081545, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=207, Percent_Identity=28.5024154589372, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=165, Percent_Identity=30.3030303030303, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=192, Percent_Identity=28.125, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=183, Percent_Identity=31.1475409836066, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=219, Percent_Identity=26.9406392694064, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6323217, Length=190, Percent_Identity=30, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324985, Length=182, Percent_Identity=28.021978021978, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24659289, Length=206, Percent_Identity=30.5825242718447, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI19920532, Length=175, Percent_Identity=30.2857142857143, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24580930, Length=175, Percent_Identity=30.2857142857143, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24653245, Length=205, Percent_Identity=30.2439024390244, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI23397593, Length=229, Percent_Identity=30.1310043668122, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281363262, Length=197, Percent_Identity=31.4720812182741, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17136662, Length=184, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85726357, Length=183, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574150, Length=237, Percent_Identity=27.4261603375527, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007328, Length=237, Percent_Identity=27.4261603375527, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574744, Length=176, Percent_Identity=30.1136363636364, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85724858, Length=171, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85724856, Length=171, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580547, Length=171, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580551, Length=171, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580549, Length=171, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24580545, Length=171, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221474134, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574259, Length=180, Percent_Identity=29.4444444444444, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221512771, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45552437, Length=241, Percent_Identity=27.8008298755187, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585557, Length=241, Percent_Identity=27.8008298755187, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641565, Length=177, Percent_Identity=31.638418079096, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015856
- InterPro:   IPR003593
- InterPro:   IPR022112 [H]

Pfam domain/function: PF00005 ABC_tran; PF12370 CoABC_C [H]

EC number: NA

Molecular weight: Translated: 24984; Mature: 24853

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSPRPLMVFEQLHCRHGERLLFDIPRLALSAGNAVVITGANGVGKTTLLRMLAGLVPA
CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCHH
AEACVDFGRGPQPLSPYPAALRARLTYVHQHPYLFRTSVRDNLAYGLTTGPHRVPRAELR
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCHHCCCEECCCCCCCCCCHHHHH
ERVDDAIRWAGLQQVLHVPPERLSGGEAQRLALARARALRTDVLLLDEPTSSLDGAAREQ
HHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHH
VLALVGELAAEGRALLMVCHDRELINLPGVTRWKLSDGRLEMRGHHAA
HHHHHHHHHCCCCEEEEEECCCCEECCCCCEEEEECCCEEEECCCCCC
>Mature Secondary Structure 
TTSPRPLMVFEQLHCRHGERLLFDIPRLALSAGNAVVITGANGVGKTTLLRMLAGLVPA
CCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCHH
AEACVDFGRGPQPLSPYPAALRARLTYVHQHPYLFRTSVRDNLAYGLTTGPHRVPRAELR
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCHHCCCEECCCCCCCCCCHHHHH
ERVDDAIRWAGLQQVLHVPPERLSGGEAQRLALARARALRTDVLLLDEPTSSLDGAAREQ
HHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHH
VLALVGELAAEGRALLMVCHDRELINLPGVTRWKLSDGRLEMRGHHAA
HHHHHHHHHCCCCEEEEEECCCCEECCCCCEEEEECCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 2496109 [H]