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The map label for this gene is tISRso11b [H]

Identifier: 17546984

GI number: 17546984

Start: 2456674

End: 2457483

Strand: Reverse

Name: tISRso11b [H]

Synonym: RSc2265

Alternate gene names: 17546984

Gene position: 2457483-2456674 (Counterclockwise)

Preceding gene: 17546985

Following gene: 17546981

Centisome position: 66.13

GC content: 59.01

Gene sequence:

>810_bases
TTGTCGAGCTTGCTCAAGGCCGCGAATCTCGCACGCAGCACGTACTACTACCAGATGGCGACAGGCCAGGCAGAGGATCG
TCACGGCGCGCTCAAGGAGCGCATTCAGCACATCTATGCCCAGCACAAGGGCCGATATGGCTACCGCCGGATCACGGCGA
CGCTCCGTCGGGCAGGGACGTTGGTGAATCACAAGACCGTACAGCGATTGATGTCGGCGCTACAGTTGAAGTCACTCGTG
CGGCCGAAGAAATACCGCTCTTACCTCGGGCAAGTCGGGCGGGTTGCTCCCAATCTGCTACAGCGCGAGTTTGAGGCGAG
CAAGCCGAACGAGAAGTGGGTAACGGACGTGACGGAGTTCAACGTCGGCGGCAAAAAGCTGTACCTGTCGCCCGTCCTGG
ACCTATACAACGGAGAGATCGTCGCCTGGCAAACCAGTGAACGACCTGATTACACGCTGATCCGGGAGATGCTCGACAAG
GCGTTGCGCAAGCTGCGCCCGTGCGAGACGCCGATGCTGCATTCGGATCAAGGCTGGCCGTATCAAATGGCAGCGTATCG
TCGCAAACTGGCCGCGCGAGGCCTGCGCCAGAGCATGTCCCGCAAAGGCAACTGCCTAGACAATGCGGCAATGGAAAGCT
TCTTCGGCACACTCAAGTCAGAGTGCTTCCGGTTAGAGCGCTTCGCGGACATCGACCAACTGCGACGCGCCATTGCCGAA
TACATCCGGTACTACAATCACGAGCGCATCAAGATCAAGCTAAAAGGGCTGAGCCCTGTGCAATACAGGACCCAGCCCTT
GGCCGCCTAA

Upstream 100 bases:

>100_bases
TGGCGTACCTAAAAAAGTTAGATGCCCTGCTGCGTGCCAAACAGCAGCAGGCACCAAAGAAAAAGCGCAAGTCGTGAGTG
CGCTGCGTGAGCGGCATTCA

Downstream 100 bases:

>100_bases
ATTACCCGTCCAACTTTACGGGGTCAGTTCACCGTGACCGGCCTTTTTTGCTGCGCGCCACGCTCAGCAATTGCCTTTCT
TTGCCTGGCCCGGCGGGCAG

Product: isrso11-transposase orfb protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGTLVNHKTVQRLMSALQLKSLV
RPKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDYTLIREMLDK
ALRKLRPCETPMLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADIDQLRRAIAE
YIRYYNHERIKIKLKGLSPVQYRTQPLAA

Sequences:

>Translated_269_residues
MSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGTLVNHKTVQRLMSALQLKSLV
RPKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDYTLIREMLDK
ALRKLRPCETPMLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADIDQLRRAIAE
YIRYYNHERIKIKLKGLSPVQYRTQPLAA
>Mature_268_residues
SSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGTLVNHKTVQRLMSALQLKSLVR
PKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDYTLIREMLDKA
LRKLRPCETPMLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADIDQLRRAIAEY
IRYYNHERIKIKLKGLSPVQYRTQPLAA

Specific function: Involved in the transposition of the insertion sequence IS150 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=248, Percent_Identity=29.8387096774194, Blast_Score=105, Evalue=3e-23,
Organism=Escherichia coli, GI1789981, Length=265, Percent_Identity=56.2264150943396, Blast_Score=338, Evalue=2e-94,
Organism=Escherichia coli, GI1788405, Length=237, Percent_Identity=37.9746835443038, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787263, Length=237, Percent_Identity=37.9746835443038, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786753, Length=237, Percent_Identity=37.9746835443038, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786570, Length=237, Percent_Identity=37.9746835443038, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786490, Length=237, Percent_Identity=37.9746835443038, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31257; Mature: 31125

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGT
CCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LVNHKTVQRLMSALQLKSLVRPKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEF
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
NVGGKKLYLSPVLDLYNGEIVAWQTSERPDYTLIREMLDKALRKLRPCETPMLHSDQGWP
CCCCCEEEHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
YQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADIDQLRRAIAE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YIRYYNHERIKIKLKGLSPVQYRTQPLAA
HHHHHCCCEEEEEEECCCCHHHCCCCCCC
>Mature Secondary Structure 
SSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGT
CHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LVNHKTVQRLMSALQLKSLVRPKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEF
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
NVGGKKLYLSPVLDLYNGEIVAWQTSERPDYTLIREMLDKALRKLRPCETPMLHSDQGWP
CCCCCEEEHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
YQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADIDQLRRAIAE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YIRYYNHERIKIKLKGLSPVQYRTQPLAA
HHHHHCCCEEEEEEECCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2841644; 2541046; 8041620; 9278503 [H]