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The map label for this gene is pcl [H]

Identifier: 17545151

GI number: 17545151

Start: 460162

End: 461904

Strand: Reverse

Name: pcl [H]

Synonym: RSc0432

Alternate gene names: 17545151

Gene position: 461904-460162 (Counterclockwise)

Preceding gene: 17545152

Following gene: 17545150

Centisome position: 12.43

GC content: 73.26

Gene sequence:

>1743_bases
ATGCGGTACCGCCGCGCCGCTCGACCTGTCGCTACTGTATTGATCCACGCCATGCAGACCTATCCGCTGGTGTTCCATGC
CTCGCCCGACCAGACCATCGCCTGGCGCGACGGCGCGCCGGTTGCCGTGCGCACCTTCCTCGCCGAAGTGGCACAGCTGG
CCGCGGCGCTGCCTGCGGGCGCGCATGTCTTCAACGCGTGCACCGACCGCTACCGGTTCACGGTCGGCCTGTGCGCGACG
CTGGTCGCCGGCAAGATCAGCCTGCTGCCGGCCTCGCAGACGCCGGAGACCGTGCGCCGGCTGGCCGCGTTCGCGCCCGA
TGTGTTCTGCCTGCACGATGCGCCCGACTGCGCGATCGCGCTGCCCCGCTTCCGGTTTCCCGAGCCGCTGCCGCCTGCGG
GGGCCGATGCGCCGGTCGACGTGCCGCAGATCGATGCATCGCGGGTGATGGCCTATATCTTCACGTCCGGCTCGACCGGC
ACGCCCGTGCCGCACCGCAAGACGTGGGGCGCGCTCGTCGAGGGCGTGCGCGCGTCGGCCGCGCGCCTCGGGCTGCTCGA
TGCGCACGCCTGCACGCTGGTGGGCACGGTGCCGCCGCAGCATATGTACGGCTTCGAGTCGACGGTGCTGCTCGCGCTGG
TCGGCGGCCTCGCCTTCAGCAACCGGCTGCCGTTCTATCCGGCCGACATCCGGGCGGCGCTCGAAGCGGTGCCCCAGCCA
CGCGTGCTGGTGACCTCGCCCATCCATCTGCGTGCGCTGCTGTCGTCGGAGCGCGCGCTGCCGCCGGCCGCGCTGGTGCT
GTCGGCGACCGCGGCGCTGCCCGAGCCCCTGGCGAGCGAGGCCGAGGCACGGCTCGCGGCGCCCCTGATCGAGATCTACG
GCAGCACCGAAACCGGCCAGATCGCCACGCGGCGGACCGCGCAGGGCGCCACGTGGCACCTGCAGCCGGGCATCCGGCTC
GAAGCCCGCGCCGGCACGCCCGATGAGGACGGACCGGTCACCTGGGCCTCGGGCGCGCACCTCGATGCACCCGTGCCGAT
GGGCGACACGCTCGAGCTGATCGACGACACCCACTTCCTGCTGCACGGACGCAAGGCCGATCTCATCAACGTCGCCGGCA
AGCGGACTTCGCTGGCCTACCTGAACCACCAGCTCAACGCGATACCGGGCGTCGAGGACGGCGTGTTCTTCATGCCGTCC
GCCGCGGACAACGGCAGCGAGCCGCCCGCGCGCCTGGCCGCGCTGGTGGTCGCACCGGAGCTTGCCGCCGCCGACCTGCT
GCACGCCCTGCGCGAGCGCATCGATCCGGCCTTCCTGCCGCGCCCGCTGCTGTTGGTCGAGGCGCTGCCGCGCGATGCCA
CCGGCAAGCTGCCGCGCGATGCGCTCGCGGCGCTGATTGCGCAGCACGGGCACCGCGGTGCCCGCGCAGGTGCGCCGGCC
CCGATCACCTTCACGATCCCCGCCGATCACCCCGCCCTGCCGGGCCATTTCCCCGGGCACCCGATCGTGCCGGGCGTCGT
GCTGCTCGATCAGGCGATCCGCCGGATCGGCGCGGCGCTGAACCGGCCGTTCGACGCCTGCCGGCTCAGTTCGGCGAAAT
TCCTCAGCCCCGCCGCGCCCGGCGTGCCGCTCGCGCTCGCCTTCGAGGCCACGGCCAGCGGGGCGATCCGCTTCACGGTC
AGCGCCGGCGAGCGCGAAGTCGCGAGCGGCGTGCTGGCGCAACAGGAGGCGGCGCGCCCATGA

Upstream 100 bases:

>100_bases
CCGCCCGCGCAACGCACCGGCCTCCTGGAGTCGGTGCGGGCCTACCGGCAGTCGATGCACGCCAGGGCAGGCCAGACCCG
ATGAATCCACCGTCCGCGCG

Downstream 100 bases:

>100_bases
AGCGCACCGAATGGGCCGAGCGCGAGGAGCGCAGCAACCTGCCGCTGCTGCGCGCCATGACGTGGATTTCGCTGCGCTTC
GGGCGGCCGGTCGGCCGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: 4CL; 4-coumaroyl-CoA synthase [H]

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MRYRRAARPVATVLIHAMQTYPLVFHASPDQTIAWRDGAPVAVRTFLAEVAQLAAALPAGAHVFNACTDRYRFTVGLCAT
LVAGKISLLPASQTPETVRRLAAFAPDVFCLHDAPDCAIALPRFRFPEPLPPAGADAPVDVPQIDASRVMAYIFTSGSTG
TPVPHRKTWGALVEGVRASAARLGLLDAHACTLVGTVPPQHMYGFESTVLLALVGGLAFSNRLPFYPADIRAALEAVPQP
RVLVTSPIHLRALLSSERALPPAALVLSATAALPEPLASEAEARLAAPLIEIYGSTETGQIATRRTAQGATWHLQPGIRL
EARAGTPDEDGPVTWASGAHLDAPVPMGDTLELIDDTHFLLHGRKADLINVAGKRTSLAYLNHQLNAIPGVEDGVFFMPS
AADNGSEPPARLAALVVAPELAAADLLHALRERIDPAFLPRPLLLVEALPRDATGKLPRDALAALIAQHGHRGARAGAPA
PITFTIPADHPALPGHFPGHPIVPGVVLLDQAIRRIGAALNRPFDACRLSSAKFLSPAAPGVPLALAFEATASGAIRFTV
SAGEREVASGVLAQQEAARP

Sequences:

>Translated_580_residues
MRYRRAARPVATVLIHAMQTYPLVFHASPDQTIAWRDGAPVAVRTFLAEVAQLAAALPAGAHVFNACTDRYRFTVGLCAT
LVAGKISLLPASQTPETVRRLAAFAPDVFCLHDAPDCAIALPRFRFPEPLPPAGADAPVDVPQIDASRVMAYIFTSGSTG
TPVPHRKTWGALVEGVRASAARLGLLDAHACTLVGTVPPQHMYGFESTVLLALVGGLAFSNRLPFYPADIRAALEAVPQP
RVLVTSPIHLRALLSSERALPPAALVLSATAALPEPLASEAEARLAAPLIEIYGSTETGQIATRRTAQGATWHLQPGIRL
EARAGTPDEDGPVTWASGAHLDAPVPMGDTLELIDDTHFLLHGRKADLINVAGKRTSLAYLNHQLNAIPGVEDGVFFMPS
AADNGSEPPARLAALVVAPELAAADLLHALRERIDPAFLPRPLLLVEALPRDATGKLPRDALAALIAQHGHRGARAGAPA
PITFTIPADHPALPGHFPGHPIVPGVVLLDQAIRRIGAALNRPFDACRLSSAKFLSPAAPGVPLALAFEATASGAIRFTV
SAGEREVASGVLAQQEAARP
>Mature_580_residues
MRYRRAARPVATVLIHAMQTYPLVFHASPDQTIAWRDGAPVAVRTFLAEVAQLAAALPAGAHVFNACTDRYRFTVGLCAT
LVAGKISLLPASQTPETVRRLAAFAPDVFCLHDAPDCAIALPRFRFPEPLPPAGADAPVDVPQIDASRVMAYIFTSGSTG
TPVPHRKTWGALVEGVRASAARLGLLDAHACTLVGTVPPQHMYGFESTVLLALVGGLAFSNRLPFYPADIRAALEAVPQP
RVLVTSPIHLRALLSSERALPPAALVLSATAALPEPLASEAEARLAAPLIEIYGSTETGQIATRRTAQGATWHLQPGIRL
EARAGTPDEDGPVTWASGAHLDAPVPMGDTLELIDDTHFLLHGRKADLINVAGKRTSLAYLNHQLNAIPGVEDGVFFMPS
AADNGSEPPARLAALVVAPELAAADLLHALRERIDPAFLPRPLLLVEALPRDATGKLPRDALAALIAQHGHRGARAGAPA
PITFTIPADHPALPGHFPGHPIVPGVVLLDQAIRRIGAALNRPFDACRLSSAKFLSPAAPGVPLALAFEATASGAIRFTV
SAGEREVASGVLAQQEAARP

Specific function: Converts p-coumaric acid into p-coumaryl CoA. This is necessary for the activation of the photoactive yellow protein (PYP) chromophore [H]

COG id: COG0365

COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012743
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.12 [H]

Molecular weight: Translated: 61012; Mature: 61012

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRRAARPVATVLIHAMQTYPLVFHASPDQTIAWRDGAPVAVRTFLAEVAQLAAALPAG
CCCHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
AHVFNACTDRYRFTVGLCATLVAGKISLLPASQTPETVRRLAAFAPDVFCLHDAPDCAIA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCEEE
LPRFRFPEPLPPAGADAPVDVPQIDASRVMAYIFTSGSTGTPVPHRKTWGALVEGVRASA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
ARLGLLDAHACTLVGTVPPQHMYGFESTVLLALVGGLAFSNRLPFYPADIRAALEAVPQP
HHHCCEECCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
RVLVTSPIHLRALLSSERALPPAALVLSATAALPEPLASEAEARLAAPLIEIYGSTETGQ
CEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
IATRRTAQGATWHLQPGIRLEARAGTPDEDGPVTWASGAHLDAPVPMGDTLELIDDTHFL
EEEEECCCCCEEEECCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCEEE
LHGRKADLINVAGKRTSLAYLNHQLNAIPGVEDGVFFMPSAADNGSEPPARLAALVVAPE
EECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCH
LAAADLLHALRERIDPAFLPRPLLLVEALPRDATGKLPRDALAALIAQHGHRGARAGAPA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
PITFTIPADHPALPGHFPGHPIVPGVVLLDQAIRRIGAALNRPFDACRLSSAKFLSPAAP
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
GVPLALAFEATASGAIRFTVSAGEREVASGVLAQQEAARP
CCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRYRRAARPVATVLIHAMQTYPLVFHASPDQTIAWRDGAPVAVRTFLAEVAQLAAALPAG
CCCHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
AHVFNACTDRYRFTVGLCATLVAGKISLLPASQTPETVRRLAAFAPDVFCLHDAPDCAIA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCEEE
LPRFRFPEPLPPAGADAPVDVPQIDASRVMAYIFTSGSTGTPVPHRKTWGALVEGVRASA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
ARLGLLDAHACTLVGTVPPQHMYGFESTVLLALVGGLAFSNRLPFYPADIRAALEAVPQP
HHHCCEECCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
RVLVTSPIHLRALLSSERALPPAALVLSATAALPEPLASEAEARLAAPLIEIYGSTETGQ
CEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
IATRRTAQGATWHLQPGIRLEARAGTPDEDGPVTWASGAHLDAPVPMGDTLELIDDTHFL
EEEEECCCCCEEEECCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCEEE
LHGRKADLINVAGKRTSLAYLNHQLNAIPGVEDGVFFMPSAADNGSEPPARLAALVVAPE
EECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCH
LAAADLLHALRERIDPAFLPRPLLLVEALPRDATGKLPRDALAALIAQHGHRGARAGAPA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
PITFTIPADHPALPGHFPGHPIVPGVVLLDQAIRRIGAALNRPFDACRLSSAKFLSPAAP
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
GVPLALAFEATASGAIRFTVSAGEREVASGVLAQQEAARP
CCCEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA