Definition | Ralstonia solanacearum GMI1000, complete genome. |
---|---|
Accession | NC_003295 |
Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is 17545150
Identifier: 17545150
GI number: 17545150
Start: 459194
End: 460165
Strand: Reverse
Name: 17545150
Synonym: RSc0431
Alternate gene names: NA
Gene position: 460165-459194 (Counterclockwise)
Preceding gene: 17545151
Following gene: 17545149
Centisome position: 12.38
GC content: 71.81
Gene sequence:
>972_bases ATGAAGCGCACCGAATGGGCCGAGCGCGAGGAGCGCAGCAACCTGCCGCTGCTGCGCGCCATGACGTGGATTTCGCTGCG CTTCGGGCGGCCGGTCGGCCGTGCCGTGCTGCGGGCCGCCGCCGCGTATTTCATGCTGTTCTCGCCGTCGGCGCGCCGGG CTTCGCGCGACTATCTGCGCCGGGTGCTCGGCCGGCCCGCGCGCTGGCGCGACGTGTACCGGCACCTGTTCACCTTCGGC GCGACGATCCACGACCGCATCTACCTGATGCACGGACGCTTCGACCTGTTCGACATCCGCCTGCAGGGCGAGGGCCTGGT CCACGCCGCGCTCGCCGAGGGGCGCGGCGTGTTCCTGATGGGCGCGCACCTGGGCAGCTTCGAGGTGGTGCGCGCCCTCG GCCGCACGCGGCCGGGCATGCGCATCGCCATCACCATGTACGAAGACAATGCGCGCAAGATCAACGCCGCGCTCGCCGCC ATCAACCCCGCCGCGAAGCCCGAAGTCATCGGCCTGGGCCGCGTCGACGCGATGCTCAAGGTGCACGAGGCGCTGGACGC CAACAGCATGGTCGGCATGCTGGCCGACCGCACCCTGCTGCGCGAGGCCGGCGCATCGGTGCAGCGCATGGCCTTCCTGG GCGCACCCGCCATGTTCCCGCTCGGCCCGCTGCACATGGCGGCCATGCTCAAGCGCCCCGTGCTCTTCATGACGGGCCTG TACCGTGACGGCAACCGCTACGACGTGCACTTCGAGACGCTGGCCGATTTCTCCGGCGTGCGGCGCGACGAGCGGGCCGC CGCGGTGCACGCCGCGCTGGCGCGCTACGTCGCGCTGCTCGAACGCTACTGCCGGGCGGCCCCCTACAACTGGTTCAACT ACTTCGACTTCTGGCAGGGCGCCGAGACCGCCGCACCGCCCCGCGACGCCGCACCGCCGGGCGCCGACCTGCCCGCCACC AGGAACCCCTGA
Upstream 100 bases:
>100_bases CCTTCGAGGCCACGGCCAGCGGGGCGATCCGCTTCACGGTCAGCGCCGGCGAGCGCGAAGTCGCGAGCGGCGTGCTGGCG CAACAGGAGGCGGCGCGCCC
Downstream 100 bases:
>100_bases CGCATGACCGCCACGCGCCGCTTCCTTCCGATCCGTCGACGGGCCTTCGGGGCCATCGCCATCACCCTGACCGCCATCGC GCTGGCCGACGCCGCCATCG
Product: hypothetical protein
Products: NA
Alternate protein names: Lipid A Biosynthesis Acyltransferase; Glycosyl Transferase Family Protein; Glycosyl Transferase Group 2 Family Protein; Glycosyl Transferase; Acetyltransferase; Glycosyl Transferase Family 2 And Acyltransferase Domains; Acyltransferase-Like Protein; Lipid A Biosynthesis Acyltransferase Family; Bacterial Lipid A Biosynthesis Acyltransferase Family; Bifunctional Glycosyl Transferase/Acyl Transferase; Family 2 Glycosyl Transferase; Oligosaccharide Acyltransferase Family Protein; XanthomoNADin Biosynthesis Acyltransferase Protein
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MKRTEWAEREERSNLPLLRAMTWISLRFGRPVGRAVLRAAAAYFMLFSPSARRASRDYLRRVLGRPARWRDVYRHLFTFG ATIHDRIYLMHGRFDLFDIRLQGEGLVHAALAEGRGVFLMGAHLGSFEVVRALGRTRPGMRIAITMYEDNARKINAALAA INPAAKPEVIGLGRVDAMLKVHEALDANSMVGMLADRTLLREAGASVQRMAFLGAPAMFPLGPLHMAAMLKRPVLFMTGL YRDGNRYDVHFETLADFSGVRRDERAAAVHAALARYVALLERYCRAAPYNWFNYFDFWQGAETAAPPRDAAPPGADLPAT RNP
Sequences:
>Translated_323_residues MKRTEWAEREERSNLPLLRAMTWISLRFGRPVGRAVLRAAAAYFMLFSPSARRASRDYLRRVLGRPARWRDVYRHLFTFG ATIHDRIYLMHGRFDLFDIRLQGEGLVHAALAEGRGVFLMGAHLGSFEVVRALGRTRPGMRIAITMYEDNARKINAALAA INPAAKPEVIGLGRVDAMLKVHEALDANSMVGMLADRTLLREAGASVQRMAFLGAPAMFPLGPLHMAAMLKRPVLFMTGL YRDGNRYDVHFETLADFSGVRRDERAAAVHAALARYVALLERYCRAAPYNWFNYFDFWQGAETAAPPRDAAPPGADLPAT RNP >Mature_323_residues MKRTEWAEREERSNLPLLRAMTWISLRFGRPVGRAVLRAAAAYFMLFSPSARRASRDYLRRVLGRPARWRDVYRHLFTFG ATIHDRIYLMHGRFDLFDIRLQGEGLVHAALAEGRGVFLMGAHLGSFEVVRALGRTRPGMRIAITMYEDNARKINAALAA INPAAKPEVIGLGRVDAMLKVHEALDANSMVGMLADRTLLREAGASVQRMAFLGAPAMFPLGPLHMAAMLKRPVLFMTGL YRDGNRYDVHFETLADFSGVRRDERAAAVHAALARYVALLERYCRAAPYNWFNYFDFWQGAETAAPPRDAAPPGADLPAT RNP
Specific function: Unknown
COG id: COG4261
COG function: function code R; Predicted acyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36259; Mature: 36259
Theoretical pI: Translated: 10.87; Mature: 10.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTEWAEREERSNLPLLRAMTWISLRFGRPVGRAVLRAAAAYFMLFSPSARRASRDYLR CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH RVLGRPARWRDVYRHLFTFGATIHDRIYLMHGRFDLFDIRLQGEGLVHAALAEGRGVFLM HHHCCCHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEEEEECCCCEEEEEHHCCCCEEEE GAHLGSFEVVRALGRTRPGMRIAITMYEDNARKINAALAAINPAAKPEVIGLGRVDAMLK ECCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHH VHEALDANSMVGMLADRTLLREAGASVQRMAFLGAPAMFPLGPLHMAAMLKRPVLFMTGL HHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHH YRDGNRYDVHFETLADFSGVRRDERAAAVHAALARYVALLERYCRAAPYNWFNYFDFWQG CCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC AETAAPPRDAAPPGADLPATRNP CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKRTEWAEREERSNLPLLRAMTWISLRFGRPVGRAVLRAAAAYFMLFSPSARRASRDYLR CCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH RVLGRPARWRDVYRHLFTFGATIHDRIYLMHGRFDLFDIRLQGEGLVHAALAEGRGVFLM HHHCCCHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEEEEECCCCEEEEEHHCCCCEEEE GAHLGSFEVVRALGRTRPGMRIAITMYEDNARKINAALAAINPAAKPEVIGLGRVDAMLK ECCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHH VHEALDANSMVGMLADRTLLREAGASVQRMAFLGAPAMFPLGPLHMAAMLKRPVLFMTGL HHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHH YRDGNRYDVHFETLADFSGVRRDERAAAVHAALARYVALLERYCRAAPYNWFNYFDFWQG CCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC AETAAPPRDAAPPGADLPATRNP CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA