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The map label for this gene is nodB [H]

Identifier: 17545147

GI number: 17545147

Start: 455208

End: 456071

Strand: Reverse

Name: nodB [H]

Synonym: RSc0428

Alternate gene names: 17545147

Gene position: 456071-455208 (Counterclockwise)

Preceding gene: 17545148

Following gene: 17545146

Centisome position: 12.27

GC content: 74.07

Gene sequence:

>864_bases
ATGAATCCGCCGTTGCCCATTCCGCCCGGCACGCCGCGCCCCTGGAAGCCGACGCCGCTCATCGCCGGCACGGCCGTGCT
GCACGCCGGCGCCGCTGCGGCGGTGGTGGCCCAGCCGGGCTGGTGGCCGTGGGCGGCCGGCGGGGTGATCGCGTCCCACC
TGGCGCTGGCCGCTGCCGGCCTGTGGCCGAGCAGCGCGCTGCTCGGCCCCAACTGGACCCGGCTGCCGGAAAGCGCGGGC
CGCAAGATCGCCCTCACCATCGATGATGGCCCGCATCCGGAAGTCACCCCGCGCGTGCTCGATCTGCTCGATCGCCATGG
CGCGCAGGCAACGTTCTTCTGTATCGGCGACCTGGCGCGCCGGCACCCCCGGCTGGTCGAAGCCATCGTCGCGCGCGGGC
ATGCGGTGGAGAACCACAGCCAGCGGCACTGGCACAACTTCTCCCTGCTGGGCCCGGGCGCGCTGCGGCGCGAGATCGAG
GCCGCGCAGGACACGCTGACCGGGCTCAGCGGCATGCAACCGCTGTTCTTCCGCGCGCCCGCGGGCTTGCGCAATCCGTT
CCTCGAGCCGGTGCTGTGCCGGCTCGGACTGCAGCTGGCAAGCTGGACCCGGCGCGGCTTCGACACCCGCACGCGCGACG
CCGCCGTGGTGACGCGCCGCCTGCTACGCGGCCTCGCCCCGCGCGACATCCTGCTCCTCCATGACGGCCATGCCGCACGC
AGCACGCAAGGCGAGCCGGTCGTCCTGGAAGTGCTGCCGGCCTTACTGCGCGCGGCGGCGGATGCGCGGTTGCAGTGCAC
AACGCTGCGCGCCGCGATCGCGCCGGAACCGATCCATCCGGCCCAGCCCGCCCCGGCCGCTTGA

Upstream 100 bases:

>100_bases
CCGGCGCCATCCTCGCACTGGTGTTTGCCGCCATCCTCGCGCCGGCGGCGACACAAGCGACCGCGCCCGCACCGACCCAC
CCCCGTCACGGAGATCCGGC

Downstream 100 bases:

>100_bases
TAAAATTTGAAAAGACCGGCACCCAGACCGTCCCATCGACCACCCCATCGCGGCCCCGCAAGGCCGCCACCGGACCCGTC
CCGTTGAAACCTCTCCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNPPLPIPPGTPRPWKPTPLIAGTAVLHAGAAAAVVAQPGWWPWAAGGVIASHLALAAAGLWPSSALLGPNWTRLPESAG
RKIALTIDDGPHPEVTPRVLDLLDRHGAQATFFCIGDLARRHPRLVEAIVARGHAVENHSQRHWHNFSLLGPGALRREIE
AAQDTLTGLSGMQPLFFRAPAGLRNPFLEPVLCRLGLQLASWTRRGFDTRTRDAAVVTRRLLRGLAPRDILLLHDGHAAR
STQGEPVVLEVLPALLRAAADARLQCTTLRAAIAPEPIHPAQPAPAA

Sequences:

>Translated_287_residues
MNPPLPIPPGTPRPWKPTPLIAGTAVLHAGAAAAVVAQPGWWPWAAGGVIASHLALAAAGLWPSSALLGPNWTRLPESAG
RKIALTIDDGPHPEVTPRVLDLLDRHGAQATFFCIGDLARRHPRLVEAIVARGHAVENHSQRHWHNFSLLGPGALRREIE
AAQDTLTGLSGMQPLFFRAPAGLRNPFLEPVLCRLGLQLASWTRRGFDTRTRDAAVVTRRLLRGLAPRDILLLHDGHAAR
STQGEPVVLEVLPALLRAAADARLQCTTLRAAIAPEPIHPAQPAPAA
>Mature_287_residues
MNPPLPIPPGTPRPWKPTPLIAGTAVLHAGAAAAVVAQPGWWPWAAGGVIASHLALAAAGLWPSSALLGPNWTRLPESAG
RKIALTIDDGPHPEVTPRVLDLLDRHGAQATFFCIGDLARRHPRLVEAIVARGHAVENHSQRHWHNFSLLGPGALRREIE
AAQDTLTGLSGMQPLFFRAPAGLRNPFLEPVLCRLGLQLASWTRRGFDTRTRDAAVVTRRLLRGLAPRDILLLHDGHAAR
STQGEPVVLEVLPALLRAAADARLQCTTLRAAIAPEPIHPAQPAPAA

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 30720; Mature: 30720

Theoretical pI: Translated: 11.48; Mature: 11.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPLPIPPGTPRPWKPTPLIAGTAVLHAGAAAAVVAQPGWWPWAAGGVIASHLALAAAG
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
LWPSSALLGPNWTRLPESAGRKIALTIDDGPHPEVTPRVLDLLDRHGAQATFFCIGDLAR
CCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHH
RHPRLVEAIVARGHAVENHSQRHWHNFSLLGPGALRREIEAAQDTLTGLSGMQPLFFRAP
HCHHHHHHHHHCCCHHCCCCHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECC
AGLRNPFLEPVLCRLGLQLASWTRRGFDTRTRDAAVVTRRLLRGLAPRDILLLHDGHAAR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
STQGEPVVLEVLPALLRAAADARLQCTTLRAAIAPEPIHPAQPAPAA
CCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPPLPIPPGTPRPWKPTPLIAGTAVLHAGAAAAVVAQPGWWPWAAGGVIASHLALAAAG
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC
LWPSSALLGPNWTRLPESAGRKIALTIDDGPHPEVTPRVLDLLDRHGAQATFFCIGDLAR
CCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHH
RHPRLVEAIVARGHAVENHSQRHWHNFSLLGPGALRREIEAAQDTLTGLSGMQPLFFRAP
HCHHHHHHHHHCCCHHCCCCHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECC
AGLRNPFLEPVLCRLGLQLASWTRRGFDTRTRDAAVVTRRLLRGLAPRDILLLHDGHAAR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
STQGEPVVLEVLPALLRAAADARLQCTTLRAAIAPEPIHPAQPAPAA
CCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]