Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17545148
Identifier: 17545148
GI number: 17545148
Start: 456068
End: 458551
Strand: Reverse
Name: 17545148
Synonym: RSc0429
Alternate gene names: NA
Gene position: 458551-456068 (Counterclockwise)
Preceding gene: 17545149
Following gene: 17545147
Centisome position: 12.34
GC content: 74.36
Gene sequence:
>2484_bases ATGCCTCCACGCCCATCGACCGGCCCCGACACGCATCGCCCGCGCGCACTGCGGCAGCCCGCCGTGCTGCTGTGGCTGCT GGGCCTGCTGGCCTGCGTCGCCGTGATCGTCCGCGCGAGCTTCGTGGCCGATCTGTCCGCCTTCCTGCCAAGCTCGCCGA GCGCCGAGCAGCGCGTGCTGGTCGACCAGTTGCGCGACGGGCTGGTGTCGCGGCTGATGCTGGTCGCGATCGAGGGCGGC GAGCCGCCGGTGCGCGCCGAGCTGTCGCGGCGGATGGCGGCGACCCTGCGCGGCGATGCCCGGTTCGCGTCGGTCAGCAA CGGCGAGCCGGTCGGCCGGGAGCGGGACCAGCGCTTCGTCTTCGATCACCGCTACCTGCTGAGCCCGGCGGTGACGCCGC AGCGCTTTTCCGCCGACGGGCTGCACCAGGCCCTGGGCGACAGCCTCGACCTGCTGAGCTCGTCGGCGGGCCTCGTCGCC AAGGCCATGCTGCCGCGCGATCCCACCGGTGAAGTGGCCGCGCTGGTCAGCCAGCTCGACAGCAGCGCGCAGCCGCCGTC GCGCCACGGCGTCTGGGTCTCGCGCGACGGCCGGCGCGCCGTGCTGGTCGCCCAGACCGCCGGCGCCGGTGCCGACACCG ACGCGCAGGCCAGCGCCATGGCCGCCGTGCGCGGCGCCTTCGAGGCCGCCGCGCGCGCGCTGCCCGACGCCGCCGCCTGC CGCCTGCTGATGACGGGCCCGGGCGTATTCGCCGTCGACACGCGCGACACCATCCGGCACGACGTGGAGCGGCTCTCCAC GCGGAGCCTCGCCCTGATCGTCGCGCTGCTGTTCGTGGTCTACCGGTCGCCGCGCACGCTCGCGCTCGGCCTGCTGCCGG TGCTGTCGGGCGTGGCCGCGGGCGTGGCGTCGGTCAGCCTGGCGTTCGGTGCCGTCCACGGATTGACGCTCGGGTTCGGC ACCACGCTGATCGGCGAAGCGGTGGACTATTCGATCTATCTGTTCGTGCAATCGGCGCAGCCGGGCGTGCGCCGGGCGGA TGCGATGCGCGGCTGGATCGCCGAGTACTGGCCGACCATCCGGCTCGGTGTGCTGACCTCCGTGTGCGGCTTTGCGTCGA TGCTGTTCTCGGGCTTTCCCGGCCTGGTGCAGCTCGGGCTGTATTCGATTGCGGGCCTGGCGACGGCCGCCCTGGTCACG CGCTTCGTGCTGCCGCATCTGCGCGGTGGGCAGGCCGCCATCCGGGATGTCTCGTGGCTGGGCGCGGCACTGGCGCGCGC GGCCCGGGCGGCGCCCCGGCTGCGCTGGCCGCTGGCGGCGCTGCTGGTTGCCGCCTGCGCCGGGCTCGCGCTGCACCATG ACCGGCTCTGGAACCGGGAGCTGGCCGCCCTGAGCCCGGTGCCGGCCCAGAGCCAGGCGCTCGATGCGAGCCTGCGCGCC GACGCCGGTGCGCCCGACGTGCGGTATCTGGTGGTGATCTCGGGCGCCGGCGAGCAGGCCGTGCTCGAGGGCGCCGAGAA GGTGTCGGCTCAGTTGCAGCCGCTGGTGGATGCGGGCGTGCTCGGCGGCTACGACAGCCCGGCGCGCTTCCTGCCGAGCG AGGCCGCGCAGCGTGCGCGCCTGGCGAGCCTGCCGAACGCCGACGCGCTCGCGGCACGCCTGCGCGCCGCCCTGGTCGAT CAGCCCATCCGCGTGAAGCCGGAACGGTTCGCGCCGTTCCTCGCCGATGTGGAGGCAGCGCGGCACCAGCCGCTGCTCAC GCGCGCGGACCTGCGCGGCACCTCGATGGCGCTGGCCGTCGATGCCCTGCTGACCGAACGCGCCGGCCGCTGGAGCGCGA TGCTGCCGCTGCGCGCGAGCGCCGACGCGCAAGCGCGCAGCGCCGGCCAGCCCGGCCTCGATACCGCCCAGGTCCGTGCC GCCGTCGAGCGCGCGGGCGTGCCGGACGCGCTCTTCATCGACATGAAGGCCGAGGCCGACCGCCTCTATGTGAACTACGT GCGCGAAGACATTCGCCTGTCGCTCGCGGGCGTCGGCGCCATCGCGCTGCTGCTGGCGATCGCGCTGCGGTCCGCGCGGC GCGCCATGCTCGCGCTCGCGCCGCTGGCGGCCGCCGTGCTGATGGTAGCCGCCGGCTTTGCGCTGGCGGGCGTGCCGCTG ACCATCCTGCACCTGATCGGCATGCTGCTGATCGTCGCGGTCGGCTCGAACTACGCGCTGTTCTTCAGCCGACGCGCCAA CGCATCGGCCGGCGCGCAGCCGGTGACGCCGCAAACCCTGGTCTCGCTGCTGATCGCCAATCTCGCCACCGTGGCCGGCT TCGGCCTGCTGGCGCTGTCGCGGGTGCCGATGCTGGAGACGTTCGGGCTGACCGTCGGCCCCGGCGCCATCCTCGCACTG GTGTTTGCCGCCATCCTCGCGCCGGCGGCGACACAAGCGACCGCGCCCGCACCGACCCACCCCCGTCACGGAGATCCGGC ATGA
Upstream 100 bases:
>100_bases CCTCGACGGCACGCGCGACCGGCTGCACCGGGTCGCGATCCAGCAGGCCGACGGCGACCGCTCGGTGATGCAGCTGCAGG ACCGCCCGGCGAACTGACCG
Downstream 100 bases:
>100_bases ATCCGCCGTTGCCCATTCCGCCCGGCACGCCGCGCCCCTGGAAGCCGACGCCGCTCATCGCCGGCACGGCCGTGCTGCAC GCCGGCGCCGCTGCGGCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Mmpl Exporter Transmembrane Protein; XanthomoNADin Exporter; Transmembrane Protein; MMPL Domain Protein; Exporter TRANSMEMBRANE PROTEIN; Phosphoglucomutase/Phosphomannomutase Alpha/Beta/Subunit
Number of amino acids: Translated: 827; Mature: 826
Protein sequence:
>827_residues MPPRPSTGPDTHRPRALRQPAVLLWLLGLLACVAVIVRASFVADLSAFLPSSPSAEQRVLVDQLRDGLVSRLMLVAIEGG EPPVRAELSRRMAATLRGDARFASVSNGEPVGRERDQRFVFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLSSSAGLVA KAMLPRDPTGEVAALVSQLDSSAQPPSRHGVWVSRDGRRAVLVAQTAGAGADTDAQASAMAAVRGAFEAAARALPDAAAC RLLMTGPGVFAVDTRDTIRHDVERLSTRSLALIVALLFVVYRSPRTLALGLLPVLSGVAAGVASVSLAFGAVHGLTLGFG TTLIGEAVDYSIYLFVQSAQPGVRRADAMRGWIAEYWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIAGLATAALVT RFVLPHLRGGQAAIRDVSWLGAALARAARAAPRLRWPLAALLVAACAGLALHHDRLWNRELAALSPVPAQSQALDASLRA DAGAPDVRYLVVISGAGEQAVLEGAEKVSAQLQPLVDAGVLGGYDSPARFLPSEAAQRARLASLPNADALAARLRAALVD QPIRVKPERFAPFLADVEAARHQPLLTRADLRGTSMALAVDALLTERAGRWSAMLPLRASADAQARSAGQPGLDTAQVRA AVERAGVPDALFIDMKAEADRLYVNYVREDIRLSLAGVGAIALLLAIALRSARRAMLALAPLAAAVLMVAAGFALAGVPL TILHLIGMLLIVAVGSNYALFFSRRANASAGAQPVTPQTLVSLLIANLATVAGFGLLALSRVPMLETFGLTVGPGAILAL VFAAILAPAATQATAPAPTHPRHGDPA
Sequences:
>Translated_827_residues MPPRPSTGPDTHRPRALRQPAVLLWLLGLLACVAVIVRASFVADLSAFLPSSPSAEQRVLVDQLRDGLVSRLMLVAIEGG EPPVRAELSRRMAATLRGDARFASVSNGEPVGRERDQRFVFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLSSSAGLVA KAMLPRDPTGEVAALVSQLDSSAQPPSRHGVWVSRDGRRAVLVAQTAGAGADTDAQASAMAAVRGAFEAAARALPDAAAC RLLMTGPGVFAVDTRDTIRHDVERLSTRSLALIVALLFVVYRSPRTLALGLLPVLSGVAAGVASVSLAFGAVHGLTLGFG TTLIGEAVDYSIYLFVQSAQPGVRRADAMRGWIAEYWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIAGLATAALVT RFVLPHLRGGQAAIRDVSWLGAALARAARAAPRLRWPLAALLVAACAGLALHHDRLWNRELAALSPVPAQSQALDASLRA DAGAPDVRYLVVISGAGEQAVLEGAEKVSAQLQPLVDAGVLGGYDSPARFLPSEAAQRARLASLPNADALAARLRAALVD QPIRVKPERFAPFLADVEAARHQPLLTRADLRGTSMALAVDALLTERAGRWSAMLPLRASADAQARSAGQPGLDTAQVRA AVERAGVPDALFIDMKAEADRLYVNYVREDIRLSLAGVGAIALLLAIALRSARRAMLALAPLAAAVLMVAAGFALAGVPL TILHLIGMLLIVAVGSNYALFFSRRANASAGAQPVTPQTLVSLLIANLATVAGFGLLALSRVPMLETFGLTVGPGAILAL VFAAILAPAATQATAPAPTHPRHGDPA >Mature_826_residues PPRPSTGPDTHRPRALRQPAVLLWLLGLLACVAVIVRASFVADLSAFLPSSPSAEQRVLVDQLRDGLVSRLMLVAIEGGE PPVRAELSRRMAATLRGDARFASVSNGEPVGRERDQRFVFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLSSSAGLVAK AMLPRDPTGEVAALVSQLDSSAQPPSRHGVWVSRDGRRAVLVAQTAGAGADTDAQASAMAAVRGAFEAAARALPDAAACR LLMTGPGVFAVDTRDTIRHDVERLSTRSLALIVALLFVVYRSPRTLALGLLPVLSGVAAGVASVSLAFGAVHGLTLGFGT TLIGEAVDYSIYLFVQSAQPGVRRADAMRGWIAEYWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIAGLATAALVTR FVLPHLRGGQAAIRDVSWLGAALARAARAAPRLRWPLAALLVAACAGLALHHDRLWNRELAALSPVPAQSQALDASLRAD AGAPDVRYLVVISGAGEQAVLEGAEKVSAQLQPLVDAGVLGGYDSPARFLPSEAAQRARLASLPNADALAARLRAALVDQ PIRVKPERFAPFLADVEAARHQPLLTRADLRGTSMALAVDALLTERAGRWSAMLPLRASADAQARSAGQPGLDTAQVRAA VERAGVPDALFIDMKAEADRLYVNYVREDIRLSLAGVGAIALLLAIALRSARRAMLALAPLAAAVLMVAAGFALAGVPLT ILHLIGMLLIVAVGSNYALFFSRRANASAGAQPVTPQTLVSLLIANLATVAGFGLLALSRVPMLETFGLTVGPGAILALV FAAILAPAATQATAPAPTHPRHGDPA
Specific function: Unknown
COG id: COG4258
COG function: function code R; Predicted exporter
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86356; Mature: 86225
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRPSTGPDTHRPRALRQPAVLLWLLGLLACVAVIVRASFVADLSAFLPSSPSAEQRVL CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH VDQLRDGLVSRLMLVAIEGGEPPVRAELSRRMAATLRGDARFASVSNGEPVGRERDQRFV HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEE FDHRYLLSPAVTPQRFSADGLHQALGDSLDLLSSSAGLVAKAMLPRDPTGEVAALVSQLD HHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH SSAQPPSRHGVWVSRDGRRAVLVAQTAGAGADTDAQASAMAAVRGAFEAAARALPDAAAC CCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHC RLLMTGPGVFAVDTRDTIRHDVERLSTRSLALIVALLFVVYRSPRTLALGLLPVLSGVAA EEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH GVASVSLAFGAVHGLTLGFGTTLIGEAVDYSIYLFVQSAQPGVRRADAMRGWIAEYWPTI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHH RLGVLTSVCGFASMLFSGFPGLVQLGLYSIAGLATAALVTRFVLPHLRGGQAAIRDVSWL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH GAALARAARAAPRLRWPLAALLVAACAGLALHHDRLWNRELAALSPVPAQSQALDASLRA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHC DAGAPDVRYLVVISGAGEQAVLEGAEKVSAQLQPLVDAGVLGGYDSPARFLPSEAAQRAR CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHH LASLPNADALAARLRAALVDQPIRVKPERFAPFLADVEAARHQPLLTRADLRGTSMALAV HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHH DALLTERAGRWSAMLPLRASADAQARSAGQPGLDTAQVRAAVERAGVPDALFIDMKAEAD HHHHHHCCCCCEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCH RLYVNYVREDIRLSLAGVGAIALLLAIALRSARRAMLALAPLAAAVLMVAAGFALAGVPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TILHLIGMLLIVAVGSNYALFFSRRANASAGAQPVTPQTLVSLLIANLATVAGFGLLALS HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RVPMLETFGLTVGPGAILALVFAAILAPAATQATAPAPTHPRHGDPA CCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PPRPSTGPDTHRPRALRQPAVLLWLLGLLACVAVIVRASFVADLSAFLPSSPSAEQRVL CCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH VDQLRDGLVSRLMLVAIEGGEPPVRAELSRRMAATLRGDARFASVSNGEPVGRERDQRFV HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEE FDHRYLLSPAVTPQRFSADGLHQALGDSLDLLSSSAGLVAKAMLPRDPTGEVAALVSQLD HHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH SSAQPPSRHGVWVSRDGRRAVLVAQTAGAGADTDAQASAMAAVRGAFEAAARALPDAAAC CCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHC RLLMTGPGVFAVDTRDTIRHDVERLSTRSLALIVALLFVVYRSPRTLALGLLPVLSGVAA EEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH GVASVSLAFGAVHGLTLGFGTTLIGEAVDYSIYLFVQSAQPGVRRADAMRGWIAEYWPTI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHH RLGVLTSVCGFASMLFSGFPGLVQLGLYSIAGLATAALVTRFVLPHLRGGQAAIRDVSWL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH GAALARAARAAPRLRWPLAALLVAACAGLALHHDRLWNRELAALSPVPAQSQALDASLRA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHC DAGAPDVRYLVVISGAGEQAVLEGAEKVSAQLQPLVDAGVLGGYDSPARFLPSEAAQRAR CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHH LASLPNADALAARLRAALVDQPIRVKPERFAPFLADVEAARHQPLLTRADLRGTSMALAV HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHH DALLTERAGRWSAMLPLRASADAQARSAGQPGLDTAQVRAAVERAGVPDALFIDMKAEAD HHHHHHCCCCCEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCH RLYVNYVREDIRLSLAGVGAIALLLAIALRSARRAMLALAPLAAAVLMVAAGFALAGVPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TILHLIGMLLIVAVGSNYALFFSRRANASAGAQPVTPQTLVSLLIANLATVAGFGLLALS HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RVPMLETFGLTVGPGAILALVFAAILAPAATQATAPAPTHPRHGDPA CCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA