Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
---|---|
Accession | NC_010503 |
Length | 751,679 |
Click here to switch to the map view.
The map label for this gene is dnaX [C]
Identifier: 170762264
GI number: 170762264
Start: 19699
End: 20493
Strand: Reverse
Name: dnaX [C]
Synonym: UPA3_0019
Alternate gene names: 170762264
Gene position: 20493-19699 (Counterclockwise)
Preceding gene: 170762140
Following gene: 170762183
Centisome position: 2.73
GC content: 20.0
Gene sequence:
>795_bases ATGAAATACAGTTTTGCTAATTTATTAATTCAATCACCTAAAACCTCACTAGAATCAGGTATTGAAGAAATTATGTTAGC TTTTATTTATGAGAAAAATCATAAAGAACAATCATTTTATGTTACTAAAGTTAAAAATAAACAATACTTTGATTTAAAAA TTTATGATGGACTATCAATGAAAAAAAGCGATGTAATTGATTTACAAAACACTTTTTTATGTGATGGAGTAGAAGATATT AATTTAAAATTTTATCTTATTAAAAATATTGACTTAGCATCAAAATATGTTTTAAATGCATTATTAAAATTTATTGAAGA ACCGCCAAAAAATACAATTGCAATTTTTAGCACTAAAAATTTAAATCAAGTTTTAAAAACTATTAAAAGTCGTTGTCAGC TTTTTTATTTACCTACTAATCATGATTTATATAAAAAATTAATTAACCAAATTAATCAACCAATTGATCTCGTGGAATGC GACTTAATGTTTGATGATTTGGATGAGCTAAAAATTTTATTAGAAAACAAGGAAATCAATGATGTTTTAACTTATTATGG AAAATTAAGTGATTTAAGAAGTTTTGAAATATTAAATGATTTAAAAGAAATATTTAAAAATTTATCTACCTTACAAATTC ATTATCTATTAAAATTAATCTTCATTAGAATTAATAATGTAAATAGCAAAGAAATTATTTTGGATTTAATGCGTGCGAAT TTAAAAATTAATATTAATAAAAATAATTTGTTTACTATTATTTATACAATTATTAATAAAAATAAAGGTGATTAA
Upstream 100 bases:
>100_bases AAAAATTATTTTTATTGATGCCAATAAAAATGAAAATGAAGTATTATGTGAGGTTAAAGAACAATTATTAAAAATTTTTA AAGAACATAAATATATATAA
Downstream 100 bases:
>100_bases CAATGTCAACAATTGTTGCTTTAGCAACCGCGCCTATGAATTGTGCCATTCACATTATTCGGGTTAGTGGTCCAAAAGCT TTTGAAATAATTAATAAAAT
Product: DNA polymerase III delta subunit
Products: diphosphate; DNAn+1
Alternate protein names: DNA Polymerase III Subunit Delta; DNA Polymerase III Delta Prime Subunit
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MKYSFANLLIQSPKTSLESGIEEIMLAFIYEKNHKEQSFYVTKVKNKQYFDLKIYDGLSMKKSDVIDLQNTFLCDGVEDI NLKFYLIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKNLNQVLKTIKSRCQLFYLPTNHDLYKKLINQINQPIDLVEC DLMFDDLDELKILLENKEINDVLTYYGKLSDLRSFEILNDLKEIFKNLSTLQIHYLLKLIFIRINNVNSKEIILDLMRAN LKININKNNLFTIIYTIINKNKGD
Sequences:
>Translated_264_residues MKYSFANLLIQSPKTSLESGIEEIMLAFIYEKNHKEQSFYVTKVKNKQYFDLKIYDGLSMKKSDVIDLQNTFLCDGVEDI NLKFYLIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKNLNQVLKTIKSRCQLFYLPTNHDLYKKLINQINQPIDLVEC DLMFDDLDELKILLENKEINDVLTYYGKLSDLRSFEILNDLKEIFKNLSTLQIHYLLKLIFIRINNVNSKEIILDLMRAN LKININKNNLFTIIYTIINKNKGD >Mature_264_residues MKYSFANLLIQSPKTSLESGIEEIMLAFIYEKNHKEQSFYVTKVKNKQYFDLKIYDGLSMKKSDVIDLQNTFLCDGVEDI NLKFYLIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKNLNQVLKTIKSRCQLFYLPTNHDLYKKLINQINQPIDLVEC DLMFDDLDELKILLENKEINDVLTYYGKLSDLRSFEILNDLKEIFKNLSTLQIHYLLKLIFIRINNVNSKEIILDLMRAN LKININKNNLFTIIYTIINKNKGD
Specific function: DNA Polymerase III Is A Complex, Multichain Enzyme Responsible For Most Of The Replicative Synthesis In Bacteria. This DNA Polymerase Also Exhibits 3' To 5' Exonuclease Activity. The Tau Chain Serves As A Scaffold To Help In The Dimerizaton Of The Core Co
COG id: COG0470
COG function: function code L; ATPase involved in DNA replication
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 30986; Mature: 30986
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYSFANLLIQSPKTSLESGIEEIMLAFIYEKNHKEQSFYVTKVKNKQYFDLKIYDGLSM CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECCCCC KKSDVIDLQNTFLCDGVEDINLKFYLIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKN CCCCCCCCCCCEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC LNQVLKTIKSRCQLFYLPTNHDLYKKLINQINQPIDLVECDLMFDDLDELKILLENKEIN HHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCCEEEHHHHHCCHHHHHHHHCCCCHH DVLTYYGKLSDLRSFEILNDLKEIFKNLSTLQIHYLLKLIFIRINNVNSKEIILDLMRAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC LKININKNNLFTIIYTIINKNKGD EEEEECCCCEEEEEEEEECCCCCC >Mature Secondary Structure MKYSFANLLIQSPKTSLESGIEEIMLAFIYEKNHKEQSFYVTKVKNKQYFDLKIYDGLSM CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECCCCC KKSDVIDLQNTFLCDGVEDINLKFYLIKNIDLASKYVLNALLKFIEEPPKNTIAIFSTKN CCCCCCCCCCCEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC LNQVLKTIKSRCQLFYLPTNHDLYKKLINQINQPIDLVECDLMFDDLDELKILLENKEIN HHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCCEEEHHHHHCCHHHHHHHHCCCCHH DVLTYYGKLSDLRSFEILNDLKEIFKNLSTLQIHYLLKLIFIRINNVNSKEIILDLMRAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC LKININKNNLFTIIYTIINKNKGD EEEEECCCCEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: Dimethyl sulfoxide epsilon,; Polymerase alpha accessory factors; Proliferating cell nuclear antigen; Replication factor A; Replication factor C; Thiol [C]
Metal ions: K+; Mg2+; Mn2+; Na+; Zn2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.0063 {dATP}} [C]
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: Nucleotidyl group transfer [C]
Inhibitor: 1, 10-Phenanthroline; 2', 3'-Dideoxythymidine5'-triphosphate polymerase beta, gamma, delta, epsilon; Aphidicolin polymerase alpha; Ara-ATP; Ara-CTP; Benzyl oxycarbonyl -Leu-Leu-al; Carbonyl diphosphonate delta, alpha,; Dideoxynucleoside 5'-triphosphate;
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA