Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is gidA
Identifier: 170762033
GI number: 170762033
Start: 41825
End: 43669
Strand: Direct
Name: gidA
Synonym: UPA3_0038
Alternate gene names: 170762033
Gene position: 41825-43669 (Clockwise)
Preceding gene: 170762241
Following gene: 170762322
Centisome position: 5.56
GC content: 29.92
Gene sequence:
>1845_bases GTGAAAAAATATGATGTAATTGTCATTGGTGCTGGACACGCAGGATTAGAAGCAGCTTTTGCAACTTCTAATCTTAATTT ACAAACAGCATTAATTACATTGGATGAAAAAGGGATTGGGATGATGCCATGCAATCCTTCAATAGGAGGGCCGGCTAAAG GAATTGTTACACGTGAAATTGATGCCCTTGGTGGTATTCAAGGTAAGGCAGCTGATGCTACAACAATGCAAATGAAAATC TTAAATTCATCAAAAGGACCAGGTGTTTGAGCGATTCGTGCACAAATTGATAAAATTGCTTACCAACGATGATTTAAGCA ACAAATTAAACAACAAAAAAATTTAGATTTAATCATTGCTGAGGTTAGTGATCTATTAGTAGAAAATAACATTGTTAAAG GTGTTGTTTTAAGTGATCAAAAAATCATCCAAGCTGATTATGTAATTATTACAACAGGAACTTATTTAAAATCAATTACT CATCGTGGTTCGGTTTGTGTTGATGAAGGAGCAGATGGTACAAAAAATGCTAAATTTTTAAGTGATGCATTAGTGAAATT AGGATTTGAGTTAATTCGTTTAAAAACAGGGACTCCTGCAAGAATTAAAAAAGATTCGATTGATTTTACAAATATGATTC TTGAACCTGGTACAAATCAAAAAATTGCTTTTAGTCACTATCACCCTGTTTATAAACCTTATGACGAACAACTTCCTTGT CATATTATTTATACAAACGAACAAACTCACCAAATTATTCGAGAAAATTTAAATAAATCAGCAATGTATGGGGGTATGAT TTCTGGAATTGGGCCACGTTATTGCCCTTCAATTGAAGATAAAATTGTTAAATTTAGTGAAAAACCGCGTCACCAAATTT TTGTTGAACCAGAATCTTATGAATTAGATTCAATGTACTTAGGTGGTTTTTCTACTTCAATGCCAATCGATGTTCAAGAA AAAATGATTCGTAGTTTACCAGGATTAGAAAACTGTGAAATACTAAAATATGCTTACGCTATTGAATATGATGCTATTGA TCCAACCCAACTATATCCTAGTTTAGAATCAAAATTAGTTAATAATTTATTTTTTGCTGGTCAAATCAATGGAACTAGTG GCTATGAAGAAGCAGCGGCCCAAGGATTAATGGCTGCAATTAATGTTAATCAAAAATATCAAAATAAAGAACCTGTCATT TTAGGTCGTGATCAAGCATATATTGGCGTTATGATTGATGATATTGTTACCAAAGGCGTTGTTGAACCATATCGTTTACT AACAAGCCGTGCGGAACACCGATTAGCATTAAGAAATGATAATGCTGATGATCGATTAATGAAAATTGGTTTTGAAATTG GTTTATTAAAACCAGAAGTATATGACCAATACTTAAATAATTTAAAACAAATTAAAGAAATCTTAAACTGATTAAAAACA ACAACTGTTGGCCAAATTGATGACTTAAAATTTACAACTCTAAAAACAAATAGTTATTTAATCGATTATTTAAAACGTCC TGAAATTAAATTAAATGATTTATTAATTTATTGTCCTATAAAAATTGAAGATGAACAAATTATCAATAAGGTACAAATTC AAGTTAAATTTGAAGGTTATATTAAAAATCAAGAAGAAAACTTAAAACAATTAAAGCGTTTAAATAATATTAAACTTCAT GCAATTGTTGATTATAAAGAAGTGCCAAATATTTCTTTAGAAACAATTGATAAATTAAATAAGATTAAACCTCTTGATCT TGAACAAGCAAGTCGGATTAGTGGGGTTAATTTAACAGACATTGCAATGATTAAATATTATTTAGAAAGAATTAAAAATG ACTAG
Upstream 100 bases:
>100_bases ATGAAAAATTAAAACTAATCAATAAATCACGTTGTTAAAAAATTTTCTCTTCTTTAATCTTGTTATAATTCTTAGTTAGT AATAGTTTAGGTGGTTAAAC
Downstream 100 bases:
>100_bases AAAAGATTTTTTTAATGTTTTAACTAGATATTTTCCTTGAGTTGATGAACAAACTTTTATGAGTTTTGAAAAGTATAAAA CAATTATTCAAAAATATAAT
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 614; Mature: 614
Protein sequence:
>614_residues MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREIDALGGIQGKAADATTMQMKI LNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAEVSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSIT HRGSVCVDEGADGTKNAKFLSDALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPC HIIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYELDSMYLGGFSTSMPIDVQE KMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNNLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVI LGRDQAYIGVMIDDIVTKGVVEPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILNWLKT TTVGQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKNQEENLKQLKRLNNIKLH AIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAMIKYYLERIKND
Sequences:
>Translated_614_residues MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREIDALGGIQGKAADATTMQMKI LNSSKGPGV*AIRAQIDKIAYQR*FKQQIKQQKNLDLIIAEVSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSIT HRGSVCVDEGADGTKNAKFLSDALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPC HIIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYELDSMYLGGFSTSMPIDVQE KMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNNLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVI LGRDQAYIGVMIDDIVTKGVVEPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILN*LKT TTVGQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKNQEENLKQLKRLNNIKLH AIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAMIKYYLERIKND >Mature_614_residues MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREIDALGGIQGKAADATTMQMKI LNSSKGPGV*AIRAQIDKIAYQR*FKQQIKQQKNLDLIIAEVSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSIT HRGSVCVDEGADGTKNAKFLSDALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPC HIIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYELDSMYLGGFSTSMPIDVQE KMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNNLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVI LGRDQAYIGVMIDDIVTKGVVEPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILN*LKT TTVGQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKNQEENLKQLKRLNNIKLH AIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAMIKYYLERIKND
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=617, Percent_Identity=37.1150729335494, Blast_Score=372, Evalue=1e-103, Organism=Homo sapiens, GI19882217, Length=642, Percent_Identity=35.6697819314642, Blast_Score=358, Evalue=1e-98, Organism=Homo sapiens, GI183227703, Length=657, Percent_Identity=34.855403348554, Blast_Score=352, Evalue=4e-97, Organism=Escherichia coli, GI2367273, Length=617, Percent_Identity=44.5705024311183, Blast_Score=504, Evalue=1e-144, Organism=Caenorhabditis elegans, GI17534255, Length=614, Percent_Identity=36.1563517915309, Blast_Score=390, Evalue=1e-109, Organism=Saccharomyces cerevisiae, GI6321202, Length=633, Percent_Identity=41.7061611374408, Blast_Score=445, Evalue=1e-126, Organism=Drosophila melanogaster, GI24658174, Length=628, Percent_Identity=36.624203821656, Blast_Score=384, Evalue=1e-106,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 68581; Mature: 68581
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREI CCCEEEEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEEEEEH DALGGIQGKAADATTMQMKILNSSKGPGVAIRAQIDKIAYQRFKQQIKQQKNLDLIIAEV HHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHH SDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLSD HHHHHHCCCEEEEEECCCEEEEECEEEEECCHHHHHHHCCCCEEEECCCCCCCCHHHHHH ALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCHI HHHHCCEEEEEEECCCCCCEECCCCCHHHEEECCCCCCEEEEECCCCCCCCCCCCCCEEE IYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYEL EEECCHHHHHHHHCCCCHHHHCCHHHCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCC DSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNN CCEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHC LFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVVE EEEEEEECCCCCHHHHHHCCEEEEEECCHHCCCCCCEEEECCCEEEEEEHHHHHHHCCCH PYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILNLKTTTV HHHHHHHHHHHEEEECCCCCCCHHEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC GQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKN CCCCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEEEECHHHHCCEEEEEEEEEEEECC QEENLKQLKRLNNIKLHAIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAM CHHHHHHHHHHCCEEEEEEECHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHH IKYYLERIKND HHHHHHHHCCC >Mature Secondary Structure MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREI CCCEEEEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEEEEEH DALGGIQGKAADATTMQMKILNSSKGPGVAIRAQIDKIAYQRFKQQIKQQKNLDLIIAEV HHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHH SDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLSD HHHHHHCCCEEEEEECCCEEEEECEEEEECCHHHHHHHCCCCEEEECCCCCCCCHHHHHH ALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCHI HHHHCCEEEEEEECCCCCCEECCCCCHHHEEECCCCCCEEEEECCCCCCCCCCCCCCEEE IYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYEL EEECCHHHHHHHHCCCCHHHHCCHHHCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCC DSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNN CCEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHC LFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVVE EEEEEEECCCCCHHHHHHCCEEEEEECCHHCCCCCCEEEECCCEEEEEEHHHHHHHCCCH PYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILNLKTTTV HHHHHHHHHHHEEEECCCCCCCHHEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC GQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKN CCCCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEEEECHHHHCCEEEEEEEEEEEECC QEENLKQLKRLNNIKLHAIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAM CHHHHHHHHHHCCEEEEEEECHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHH IKYYLERIKND HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA