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The map label for this gene is cph2 [H]

Identifier: 170757365

GI number: 170757365

Start: 3656031

End: 3657344

Strand: Reverse

Name: cph2 [H]

Synonym: CLD_1159

Alternate gene names: 170757365

Gene position: 3657344-3656031 (Counterclockwise)

Preceding gene: 170756856

Following gene: 170754490

Centisome position: 92.4

GC content: 24.66

Gene sequence:

>1314_bases
ATGATTTATACTAAACTAAGAAATTGCTTCTATGAATATTTATTCTATAAAAAAAATACTAAAATCAGAATTATTATTTA
TGTAGTTTTAGTATTTATATTAATAGAAGCTTTTTATTTAAAAATTTCTTCAGATATTCAAAAAGATATAGGTGAAAAAG
CTATACTTATTGCAACAGATTTTGCTAAAGATATTAATATAGATAAAAATGAATTTAATCGACTAATTTCTTTAGATTTG
AACCAACTTATAAAAGATGACACAAATATAAAATTTGAATATAGAGCAAGATATTTAATGAAATATTTGGATATAAAATA
TATTTATATTATGTCTGTTATACCAAGTTCTCAGGTAAAATATAAAGTGGAGAAAGATGAAGAAAATTTATATAATAAAT
CACAAGGAACTCCACTTAAAGCTATTTACTTATTAGATGCTGTAATAAATGATATTGAAAGAAATAAGGATATGACCGAT
GGAAAATATTTAGATAAAGATAGGTATACTATCATTAATGATGAATATATTAAGGTTTGTAAGAATAAAAAAGCTATATA
TTTTTTTAATAGAGATAAATGGGGCAATTATTTGACAGCATATGCTCCAATCTATGATAATAATGGCAGATTTATGGGGG
TTATGGGAGTTGATATCTACCTTAGACACTATCTAAGACTTGCGAATAATAATATATATAGTATAGTTGGAATTAGTATA
ATCATTAGTATAATTGCAATAATAAAAATAATTAAGCTAAGCAAAGAAAATTATTCTGCTAATAATAAAATAAAAAAACT
ATCAATATGTTCCTTAACTTATGCATTAAATAGGGGAAGTTTCATGGAAAAACTCAAAGATGAATTTGATGATAGTAAGA
AAAATAAGAGGCATATATCTATAGTATTCATAGATGTGGATTATTTTAAAGAATATAATGATAATTATGGACATATTGAA
GGAGATAAAGTTCTAATGAAAATAGGTAAAAGTATTATTAATGTAGCAAAGAAATACTCAGGAGTTGTGGGAAGATATGG
GGGAGACGAATTCATTGTACTTTTAAATGAGGTCAAGACTTCAGAATTAGAAGTCATAGCAGTGGAAATTTCAAAAGAAA
TAAATAAATTAAAAATAAAAAGAGAGTATTCCCATATTAGCAAATATCAAACGGTTAGTATTGGTGTTGCTAGTATCATC
CCAAAGGAAGAAGAAAAAATAGAAGATTTAATAAACTATGCGGATAAGGCCTTGTACAAATCTAAAGAAAATGGAAGAGA
TTGTATATACGTATGGGGAGAAGATTTAAAATAA

Upstream 100 bases:

>100_bases
ATAAGGGTAGGAAAGTTTAAAGAATGAAATCAGCTAGACAATATATTTATTAGCAAAAGACAGGAGTTTAATATAATGAA
AATGGGTAGAAGGCGATAGA

Downstream 100 bases:

>100_bases
ATTTATGGTATTCAAAGCACAGTTGCATTATATAGAATGTGACTGTGTTTTTTATGTATATAAAAATATTCCTGATTAGC
ATATTGAAAATTTTGATTAT

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MIYTKLRNCFYEYLFYKKNTKIRIIIYVVLVFILIEAFYLKISSDIQKDIGEKAILIATDFAKDINIDKNEFNRLISLDL
NQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPSSQVKYKVEKDEENLYNKSQGTPLKAIYLLDAVINDIERNKDMTD
GKYLDKDRYTIINDEYIKVCKNKKAIYFFNRDKWGNYLTAYAPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYNDNYGHIE
GDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAVEISKEINKLKIKREYSHISKYQTVSIGVASII
PKEEEKIEDLINYADKALYKSKENGRDCIYVWGEDLK

Sequences:

>Translated_437_residues
MIYTKLRNCFYEYLFYKKNTKIRIIIYVVLVFILIEAFYLKISSDIQKDIGEKAILIATDFAKDINIDKNEFNRLISLDL
NQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPSSQVKYKVEKDEENLYNKSQGTPLKAIYLLDAVINDIERNKDMTD
GKYLDKDRYTIINDEYIKVCKNKKAIYFFNRDKWGNYLTAYAPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYNDNYGHIE
GDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAVEISKEINKLKIKREYSHISKYQTVSIGVASII
PKEEEKIEDLINYADKALYKSKENGRDCIYVWGEDLK
>Mature_437_residues
MIYTKLRNCFYEYLFYKKNTKIRIIIYVVLVFILIEAFYLKISSDIQKDIGEKAILIATDFAKDINIDKNEFNRLISLDL
NQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPSSQVKYKVEKDEENLYNKSQGTPLKAIYLLDAVINDIERNKDMTD
GKYLDKDRYTIINDEYIKVCKNKKAIYFFNRDKWGNYLTAYAPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYNDNYGHIE
GDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAVEISKEINKLKIKREYSHISKYQTVSIGVASII
PKEEEKIEDLINYADKALYKSKENGRDCIYVWGEDLK

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=29.3413173652695, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=31.2883435582822, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=30.8900523560209, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=30.9090909090909, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787802, Length=193, Percent_Identity=32.6424870466321, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=150, Percent_Identity=32, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081977, Length=255, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081881, Length=128, Percent_Identity=36.71875, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=31.6770186335404, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=38.0645161290323, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=31.8471337579618, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 51177; Mature: 51177

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYTKLRNCFYEYLFYKKNTKIRIIIYVVLVFILIEAFYLKISSDIQKDIGEKAILIATD
CCHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
FAKDINIDKNEFNRLISLDLNQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPSSQVK
CCCCCCCCHHHHHHHHHHCHHHHHCCCCCEEEHHHHHHHHHHHCCEEEEEEEECCCCCEE
YKVEKDEENLYNKSQGTPLKAIYLLDAVINDIERNKDMTDGKYLDKDRYTIINDEYIKVC
EEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECHHHHHHH
KNKKAIYFFNRDKWGNYLTAYAPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
CCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHCCCEEEHHHHHH
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGSFMEKLKDEFDDSKKNKRHIS
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEHHCCCHHHHHHHHHHCCCCCCCEEEE
IVFIDVDYFKEYNDNYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKT
EEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCC
SELEVIAVEISKEINKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYK
CCEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHC
SKENGRDCIYVWGEDLK
CCCCCCEEEEECCCCCC
>Mature Secondary Structure
MIYTKLRNCFYEYLFYKKNTKIRIIIYVVLVFILIEAFYLKISSDIQKDIGEKAILIATD
CCHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
FAKDINIDKNEFNRLISLDLNQLIKDDTNIKFEYRARYLMKYLDIKYIYIMSVIPSSQVK
CCCCCCCCHHHHHHHHHHCHHHHHCCCCCEEEHHHHHHHHHHHCCEEEEEEEECCCCCEE
YKVEKDEENLYNKSQGTPLKAIYLLDAVINDIERNKDMTDGKYLDKDRYTIINDEYIKVC
EEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECHHHHHHH
KNKKAIYFFNRDKWGNYLTAYAPIYDNNGRFMGVMGVDIYLRHYLRLANNNIYSIVGISI
CCCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHCCCEEEHHHHHH
IISIIAIIKIIKLSKENYSANNKIKKLSICSLTYALNRGSFMEKLKDEFDDSKKNKRHIS
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEHHCCCHHHHHHHHHHCCCCCCCEEEE
IVFIDVDYFKEYNDNYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKT
EEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCC
SELEVIAVEISKEINKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYK
CCEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHC
SKENGRDCIYVWGEDLK
CCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]