| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is lysA
Identifier: 170755777
GI number: 170755777
Start: 3622345
End: 3623631
Strand: Reverse
Name: lysA
Synonym: CLD_1185
Alternate gene names: 170755777
Gene position: 3623631-3622345 (Counterclockwise)
Preceding gene: 170756182
Following gene: 170754772
Centisome position: 91.55
GC content: 28.44
Gene sequence:
>1287_bases ATGAAACTTTTTGGAAGTATGAATATAAAGAACAATAATTTATATATAGGTGAAATAAATACGTTAGACTTGGCTAAGAA ATTTAAAACACCTTTATATGTAATGGATGAAACTCTTATAAGAGATAATTGTAGAAGATATGTAACTTCATTTAATAAAG AAAAAAACAAAGTAGCTTATGCAGGAAAAGCTTTTCTTACTAAGGCTATGTGCAATTTAATAAAAGAAGAAGGGCTTTCT TTAGATGTAGTATCAGGAGGAGAGATATTTACTGCTTATAGAAGTGGATTTCCTATGGACAAAGTGTATTTTCATGGTAA TAATAAAACTATAGAAGAAATAGAAATGGCTATAAATTTAGGGGTCGGAACCTTTGTAGCAGATAATTTTCAGGAATTAG ATAAGATAAACAATATCTGTAAAAATAAAAATATAAAGCAAAGAGTAATTTTAAGAATAATTCCAGGTATTGAGGCGCAT ACCCATGAATATATTAGAACTGGCCAAATAGATTCCAAATTTGGATTTACATTAATAGATGATGGTGCTATCAAAGCAGT AAAAAAAGCCTCTGAATTAGAAAACATACAATTTGTTGGGTTCCATTGTCATATAGGTTCTCAGATATTTGAAACAAAAC CTTATGAAGAAGAAATAGAAATAATGCTTAGGTTAATAAAAAGAACTAATGAAGAACTAAATATAGATATAGAGGAACTA GATTTAGGTGGGGGTTTTGGAATATATTATAAAGAGGGGGATGAACCTAAAAAAATAGAAGAGTTTTGCAAAATTATATT AGATAAAACGAAAAGTTATTCAAAAGAGATAGGAGTTAAAGAACCTATTCTAGTAATAGAGCCAGGTAGATCTATAGTCG GTAATTCAGGAGTTACATTGTATTCTGTAGGTTCTATTAAAGAAATCCCTAATATAGCTAAATATATAGCTGTAAATGGA GGGATGACTGATAATATAAGGCCTGCATTATATAAATCAGAATATGAATGTGTAGTATGTAACAAGGCTTTAGATAATCT ATTAGAAGAAGTAAAAGTAGTAGGGAAATGTTGTGAATCAGGGGACATACTTATAGATAATGTAAAATTACCAATAGTAG AAACTGATGATTTGCTCGCAATATTAAATACAGGAGCTTATGGATATTCTATGGCAAGTAATTATAATAAAGCATTATTA CCATCTGTAGTCTTTGTTAATAATGATAAAACAAAATTAGTATGTAGAAGACAAAGCTATGAAAATTTAATACAAAATGA AGTGTAA
Upstream 100 bases:
>100_bases CTCAGAAATAAGAATCACTTGTGCAATAAATGTAAGGGATAAAATAAATGCTATAAATTTAGTAGTAAAAGAATTTAATT TATAAATAGGATGTGGGAGT
Downstream 100 bases:
>100_bases AATATTTATCAAAAACAATATAGTTACTGAAATAAATGTTTTTTAGTAATGATAAATAAAAAATCTTATTGAGTTGAATT TGAACTAACTCAATAAGATT
Product: diaminopimelate decarboxilase
Products: NA
Alternate protein names: DAP decarboxylase [H]
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MKLFGSMNIKNNNLYIGEINTLDLAKKFKTPLYVMDETLIRDNCRRYVTSFNKEKNKVAYAGKAFLTKAMCNLIKEEGLS LDVVSGGEIFTAYRSGFPMDKVYFHGNNKTIEEIEMAINLGVGTFVADNFQELDKINNICKNKNIKQRVILRIIPGIEAH THEYIRTGQIDSKFGFTLIDDGAIKAVKKASELENIQFVGFHCHIGSQIFETKPYEEEIEIMLRLIKRTNEELNIDIEEL DLGGGFGIYYKEGDEPKKIEEFCKIILDKTKSYSKEIGVKEPILVIEPGRSIVGNSGVTLYSVGSIKEIPNIAKYIAVNG GMTDNIRPALYKSEYECVVCNKALDNLLEEVKVVGKCCESGDILIDNVKLPIVETDDLLAILNTGAYGYSMASNYNKALL PSVVFVNNDKTKLVCRRQSYENLIQNEV
Sequences:
>Translated_428_residues MKLFGSMNIKNNNLYIGEINTLDLAKKFKTPLYVMDETLIRDNCRRYVTSFNKEKNKVAYAGKAFLTKAMCNLIKEEGLS LDVVSGGEIFTAYRSGFPMDKVYFHGNNKTIEEIEMAINLGVGTFVADNFQELDKINNICKNKNIKQRVILRIIPGIEAH THEYIRTGQIDSKFGFTLIDDGAIKAVKKASELENIQFVGFHCHIGSQIFETKPYEEEIEIMLRLIKRTNEELNIDIEEL DLGGGFGIYYKEGDEPKKIEEFCKIILDKTKSYSKEIGVKEPILVIEPGRSIVGNSGVTLYSVGSIKEIPNIAKYIAVNG GMTDNIRPALYKSEYECVVCNKALDNLLEEVKVVGKCCESGDILIDNVKLPIVETDDLLAILNTGAYGYSMASNYNKALL PSVVFVNNDKTKLVCRRQSYENLIQNEV >Mature_428_residues MKLFGSMNIKNNNLYIGEINTLDLAKKFKTPLYVMDETLIRDNCRRYVTSFNKEKNKVAYAGKAFLTKAMCNLIKEEGLS LDVVSGGEIFTAYRSGFPMDKVYFHGNNKTIEEIEMAINLGVGTFVADNFQELDKINNICKNKNIKQRVILRIIPGIEAH THEYIRTGQIDSKFGFTLIDDGAIKAVKKASELENIQFVGFHCHIGSQIFETKPYEEEIEIMLRLIKRTNEELNIDIEEL DLGGGFGIYYKEGDEPKKIEEFCKIILDKTKSYSKEIGVKEPILVIEPGRSIVGNSGVTLYSVGSIKEIPNIAKYIAVNG GMTDNIRPALYKSEYECVVCNKALDNLLEEVKVVGKCCESGDILIDNVKLPIVETDDLLAILNTGAYGYSMASNYNKALL PSVVFVNNDKTKLVCRRQSYENLIQNEV
Specific function: Lysine biosynthesis; last step. [C]
COG id: COG0019
COG function: function code E; Diaminopimelate decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family [H]
Homologues:
Organism=Escherichia coli, GI1789203, Length=425, Percent_Identity=30.5882352941176, Blast_Score=165, Evalue=5e-42, Organism=Drosophila melanogaster, GI24586472, Length=359, Percent_Identity=24.2339832869081, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009006 - InterPro: IPR002986 - InterPro: IPR022643 - InterPro: IPR022657 - InterPro: IPR022644 - InterPro: IPR022653 - InterPro: IPR000183 [H]
Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]
EC number: =4.1.1.20 [H]
Molecular weight: Translated: 48165; Mature: 48165
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLFGSMNIKNNNLYIGEINTLDLAKKFKTPLYVMDETLIRDNCRRYVTSFNKEKNKVAY CCCEECCEECCCCEEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEE AGKAFLTKAMCNLIKEEGLSLDVVSGGEIFTAYRSGFPMDKVYFHGNNKTIEEIEMAINL HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHCCCCCCEEEEECCCCCHHHHHHHHHC GVGTFVADNFQELDKINNICKNKNIKQRVILRIIPGIEAHTHEYIRTGQIDSKFGFTLID CCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEC DGAIKAVKKASELENIQFVGFHCHIGSQIFETKPYEEEIEIMLRLIKRTNEELNIDIEEL CHHHHHHHHHHHHCCEEEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHEEE DLGGGFGIYYKEGDEPKKIEEFCKIILDKTKSYSKEIGVKEPILVIEPGRSIVGNSGVTL ECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEECCCCEEE YSVGSIKEIPNIAKYIAVNGGMTDNIRPALYKSEYECVVCNKALDNLLEEVKVVGKCCES EECCCHHHCCHHHHHEEECCCCCCCCCCHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC GDILIDNVKLPIVETDDLLAILNTGAYGYSMASNYNKALLPSVVFVNNDKTKLVCRRQSY CCEEEECEEEEEEECCCEEEEEECCCCCCHHHCCCCCCCCCEEEEEECCCEEEEEEHHHH ENLIQNEV HHHHHCCC >Mature Secondary Structure MKLFGSMNIKNNNLYIGEINTLDLAKKFKTPLYVMDETLIRDNCRRYVTSFNKEKNKVAY CCCEECCEECCCCEEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEE AGKAFLTKAMCNLIKEEGLSLDVVSGGEIFTAYRSGFPMDKVYFHGNNKTIEEIEMAINL HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHCCCCCCEEEEECCCCCHHHHHHHHHC GVGTFVADNFQELDKINNICKNKNIKQRVILRIIPGIEAHTHEYIRTGQIDSKFGFTLID CCHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEC DGAIKAVKKASELENIQFVGFHCHIGSQIFETKPYEEEIEIMLRLIKRTNEELNIDIEEL CHHHHHHHHHHHHCCEEEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEHEEE DLGGGFGIYYKEGDEPKKIEEFCKIILDKTKSYSKEIGVKEPILVIEPGRSIVGNSGVTL ECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEECCCCEEE YSVGSIKEIPNIAKYIAVNGGMTDNIRPALYKSEYECVVCNKALDNLLEEVKVVGKCCES EECCCHHHCCHHHHHEEECCCCCCCCCCHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC GDILIDNVKLPIVETDDLLAILNTGAYGYSMASNYNKALLPSVVFVNNDKTKLVCRRQSY CCEEEECEEEEEEECCCEEEEEECCCCCCHHHCCCCCCCCCEEEEEECCCEEEEEEHHHH ENLIQNEV HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8215365 [H]