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The map label for this gene is yxdJ [H]

Identifier: 170755698

GI number: 170755698

Start: 398395

End: 399087

Strand: Direct

Name: yxdJ [H]

Synonym: CLD_0435

Alternate gene names: 170755698

Gene position: 398395-399087 (Clockwise)

Preceding gene: 170755314

Following gene: 170754686

Centisome position: 10.06

GC content: 27.27

Gene sequence:

>693_bases
ATGAATTATAAAATATATATTATAGAAGATGATTTATCAATAAGCTTATTGTTAAAAGACTATATTACTAAATATGGATT
TAATGTAAAGATAGCAGAAAACTTTCAAAATATAATGGAGGATTTTAACGAATTTAATCCTGATGTAGTATTATTAGATG
TAAATTTGCCCAAATATGATGGATTTTATTGGTGTAGAAAGATAAGACAGGAATCAAAAATCCCTATAATTTTTATATCA
GCTAGAGATAGTGGAATGGATCAGGTAATGGCACTTGAAAACGGAGCTGATGATTATATAATTAAACCTTTTTATTGTGA
TGTTATTATGGCTAAGATAAAAAGTCATATAAGAAGAGCCTTTGGAGAGTATGCATCAAAGATTGATGAAAAAATAGTGG
AACTTCAAGGATTGAAATTTTATAAAGACAGGTCTGAAATAGAGTTTAAAGATGAAAGAGTGATTATAACTAAAAAGGAA
GGGATATTATTAGAATATCTTATGAAAAAATATCCTAAAGTTGTAAATAGGGACTTCCTTTTAGAAAAAATATGGGATGA
TATTGAGTTCGTAGAAGAGAATACATTGAATGTTAATGTAAGTAGAATAAGAAAAAGACTTCATAAGTTAGGAATAGAAG
ATGGAATAGAAACTGTAAGAGGTGTGGGATATAGATTGAATAAAACTTGGTAG

Upstream 100 bases:

>100_bases
TTTATATTTAGAGAGTAAAAGATTTATATAAATACAATGAAAACATATATTAATATTGGTATAATTAATGTAATCCTATA
ATGAATAAGGAGAAAATAAT

Downstream 100 bases:

>100_bases
GGAGCATAAAAAATGAAGTTATTTATAAAAGACAATAAAGGATATATAGTTGTATATTCTATAAGTATTTTTATTACATT
AGGATATTTAGCCCTTTCAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFQNIMEDFNEFNPDVVLLDVNLPKYDGFYWCRKIRQESKIPIIFIS
ARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYASKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKE
GILLEYLMKKYPKVVNRDFLLEKIWDDIEFVEENTLNVNVSRIRKRLHKLGIEDGIETVRGVGYRLNKTW

Sequences:

>Translated_230_residues
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFQNIMEDFNEFNPDVVLLDVNLPKYDGFYWCRKIRQESKIPIIFIS
ARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYASKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKE
GILLEYLMKKYPKVVNRDFLLEKIWDDIEFVEENTLNVNVSRIRKRLHKLGIEDGIETVRGVGYRLNKTW
>Mature_230_residues
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFQNIMEDFNEFNPDVVLLDVNLPKYDGFYWCRKIRQESKIPIIFIS
ARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYASKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKE
GILLEYLMKKYPKVVNRDFLLEKIWDDIEFVEENTLNVNVSRIRKRLHKLGIEDGIETVRGVGYRLNKTW

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=32.1739130434783, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=31.5315315315315, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=30.9417040358744, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=27.1111111111111, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=30.3964757709251, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1789402, Length=226, Percent_Identity=30.9734513274336, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=29.9107142857143, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790552, Length=227, Percent_Identity=31.7180616740088, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=28.8288288288288, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=30.3964757709251, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=25.6756756756757, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=26.431718061674, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=26.3157894736842, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=27.4678111587983, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790299, Length=134, Percent_Identity=29.1044776119403, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788550, Length=105, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1790437, Length=114, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27309; Mature: 27309

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFQNIMEDFNEFNPDVVLLDVNLPKYD
CCEEEEEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCC
GFYWCRKIRQESKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRA
CHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHH
FGEYASKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFL
HHHHHHHHHHHHHHHHCCCEECCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
LEKIWDDIEFVEENTLNVNVSRIRKRLHKLGIEDGIETVRGVGYRLNKTW
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHCCEEECCCC
>Mature Secondary Structure
MNYKIYIIEDDLSISLLLKDYITKYGFNVKIAENFQNIMEDFNEFNPDVVLLDVNLPKYD
CCEEEEEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCC
GFYWCRKIRQESKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRA
CHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHH
FGEYASKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFL
HHHHHHHHHHHHHHHHCCCEECCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
LEKIWDDIEFVEENTLNVNVSRIRKRLHKLGIEDGIETVRGVGYRLNKTW
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]