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The map label for this gene is cspC [H]

Identifier: 170755331

GI number: 170755331

Start: 360559

End: 360756

Strand: Direct

Name: cspC [H]

Synonym: CLD_0469

Alternate gene names: 170755331

Gene position: 360559-360756 (Clockwise)

Preceding gene: 170755076

Following gene: 170757736

Centisome position: 9.11

GC content: 31.31

Gene sequence:

>198_bases
ATGAATGGTACAGTAAAATGGTTTAATGGAGAAAAAGGATTTGGATTTATTACAGGAGAAGATGGAAATGATGTTTTTGC
ACATTTTTCTCAAATAAATTCAGAAGGTTACAAATCACTTGAAGAAGGTCAAAAAGTTTCTTATGACGTTGTTAAGGGCC
CAAAAGGACCTCAAGCAGAAAATATCACTATTATTTAA

Upstream 100 bases:

>100_bases
TTTCAATTAGTACTTAATAAATATAGTATGGTGATATCGAAATTTTATTAGTGGATTATTACAATGAATTTAAGAATAAA
ATTTCGGAGGTACACATTAT

Downstream 100 bases:

>100_bases
TTAATAAATATTTTACCCCTTAAATAGCTAGTCTATTTAAGGGGTTTTTAGTTGTTTATAAATCTATATAAGATTTGTTT
TAAATATAAAAAAATTATCC

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MNGTVKWFNGEKGFGFITGEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQAENITII

Sequences:

>Translated_65_residues
MNGTVKWFNGEKGFGFITGEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQAENITII
>Mature_65_residues
MNGTVKWFNGEKGFGFITGEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQAENITII

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=62.1212121212121, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=54.5454545454545, Blast_Score=78, Evalue=9e-17,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=55.3846153846154, Blast_Score=77, Evalue=1e-16,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=54.5454545454545, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=50, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=56.0606060606061, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=54.6875, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7112; Mature: 7112

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGTVKWFNGEKGFGFITGEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQAE
CCCCEEEECCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCCC
NITII
CEEEC
>Mature Secondary Structure
MNGTVKWFNGEKGFGFITGEDGNDVFAHFSQINSEGYKSLEEGQKVSYDVVKGPKGPQAE
CCCCEEEECCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCCC
NITII
CEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]