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The map label for this gene is 170751793

Identifier: 170751793

GI number: 170751793

Start: 5726755

End: 5727651

Strand: Direct

Name: 170751793

Synonym: Mrad2831_5423

Alternate gene names: NA

Gene position: 5726755-5727651 (Clockwise)

Preceding gene: 170751792

Following gene: 170751794

Centisome position: 94.22

GC content: 72.13

Gene sequence:

>897_bases
ATGAGCACCCTCGATTCCGCCACCGCGACGCGCTCCGGCAAGGGCCACCGGGACGAGAATTTCCCCGTCGCCTCGCACCT
GATCCATCCCCGCCACCGGGGCGCGATCCTGGCCTTCTACAACTTCGTCCGCGCCGGCGACGACGTGGCCGATCACGCCG
CCCTGTCGCCCGAGCGCAAGCTAGAGCTGCTCGATCGCCTCGCCGACGCGCTCACGGGCGCCGGGCCGTCCGATCCCGAG
GCCGAGCCGCTGAAGCGCGAGCTCGCGGCCCGCGGCCTGCCGCCCCGGCACGCGCTCGAGCTCCTCGACGCGTTCCGCAT
GGACGCGCGCAAGAACCGCTACGCCGACTGGGACGAGCTGATCCATTACTGCCGCTACTCGGCCATGCCGGTGGGGCGGT
TCGTGCTCGACGTCCACGGCGAGGATCCGGCCCGGGTCTACCGAGCCTCCGACGCCATCTGCGCGGCGCTGCAGGTCATC
AATCATCTCCAGGATTGCGGCAAGGACTTCGCCGCACTCGACCGGGTCTACCTCCCGCAGGATTGCCTGGACCGTCACGG
CGCCACCGTGGCGATGCTCGGCGAGGCCAAGGCGCCGCCGCAGCTCCGGGCCGCGATCCGCGAGCTCGCGCAGCGATGCC
TCGAGCTCCTCGACGAGGGCGCGGTCCTGCCGGACCTGATCGACGATCTGCGCCTGTCACTGGAGATCGCCGCCATCCAC
CGGCTCGCCGTCGTGCTGAGCCGGGGCCTGCTGGAGCGCGACCCGCTCTCCGAGAAAGTTCATCACGGCAAGGCCGCCTT
CGCGCTGACGGCGCTGGGCGGCATCGCCGCCACCCTGGCGCGCCGGCCCTTCCGCGGCCGGACCGTCCGGGCCGCGGCTC
AGGGAATCCGCTCGTGA

Upstream 100 bases:

>100_bases
CGGACCGGAAGGCGCGCGCCGAGCTCGGCTACACGGCCCGGCCCTACCGCGAGGGTCTGTCCGACGCGATCACGTGGTTC
CGGGAGGCGGGCTACCTCGC

Downstream 100 bases:

>100_bases
CCGCCACCGCCACGCCCGCCCAGGACCCGGAGAGCGCCGCCCCGGCGCTGCCCGCCGCCGGCTCCTCCTTCTACACGGCG
ATGCGCCTGCTGCCGAAGGA

Product: squalene synthase HpnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSTLDSATATRSGKGHRDENFPVASHLIHPRHRGAILAFYNFVRAGDDVADHAALSPERKLELLDRLADALTGAGPSDPE
AEPLKRELAARGLPPRHALELLDAFRMDARKNRYADWDELIHYCRYSAMPVGRFVLDVHGEDPARVYRASDAICAALQVI
NHLQDCGKDFAALDRVYLPQDCLDRHGATVAMLGEAKAPPQLRAAIRELAQRCLELLDEGAVLPDLIDDLRLSLEIAAIH
RLAVVLSRGLLERDPLSEKVHHGKAAFALTALGGIAATLARRPFRGRTVRAAAQGIRS

Sequences:

>Translated_298_residues
MSTLDSATATRSGKGHRDENFPVASHLIHPRHRGAILAFYNFVRAGDDVADHAALSPERKLELLDRLADALTGAGPSDPE
AEPLKRELAARGLPPRHALELLDAFRMDARKNRYADWDELIHYCRYSAMPVGRFVLDVHGEDPARVYRASDAICAALQVI
NHLQDCGKDFAALDRVYLPQDCLDRHGATVAMLGEAKAPPQLRAAIRELAQRCLELLDEGAVLPDLIDDLRLSLEIAAIH
RLAVVLSRGLLERDPLSEKVHHGKAAFALTALGGIAATLARRPFRGRTVRAAAQGIRS
>Mature_297_residues
STLDSATATRSGKGHRDENFPVASHLIHPRHRGAILAFYNFVRAGDDVADHAALSPERKLELLDRLADALTGAGPSDPEA
EPLKRELAARGLPPRHALELLDAFRMDARKNRYADWDELIHYCRYSAMPVGRFVLDVHGEDPARVYRASDAICAALQVIN
HLQDCGKDFAALDRVYLPQDCLDRHGATVAMLGEAKAPPQLRAAIRELAQRCLELLDEGAVLPDLIDDLRLSLEIAAIHR
LAVVLSRGLLERDPLSEKVHHGKAAFALTALGGIAATLARRPFRGRTVRAAAQGIRS

Specific function: Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017827
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: NA

Molecular weight: Translated: 32651; Mature: 32520

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLDSATATRSGKGHRDENFPVASHLIHPRHRGAILAFYNFVRAGDDVADHAALSPERK
CCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHH
LELLDRLADALTGAGPSDPEAEPLKRELAARGLPPRHALELLDAFRMDARKNRYADWDEL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
IHYCRYSAMPVGRFVLDVHGEDPARVYRASDAICAALQVINHLQDCGKDFAALDRVYLPQ
HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DCLDRHGATVAMLGEAKAPPQLRAAIRELAQRCLELLDEGAVLPDLIDDLRLSLEIAAIH
HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RLAVVLSRGLLERDPLSEKVHHGKAAFALTALGGIAATLARRPFRGRTVRAAAQGIRS
HHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
STLDSATATRSGKGHRDENFPVASHLIHPRHRGAILAFYNFVRAGDDVADHAALSPERK
CCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHH
LELLDRLADALTGAGPSDPEAEPLKRELAARGLPPRHALELLDAFRMDARKNRYADWDEL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
IHYCRYSAMPVGRFVLDVHGEDPARVYRASDAICAALQVINHLQDCGKDFAALDRVYLPQ
HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DCLDRHGATVAMLGEAKAPPQLRAAIRELAQRCLELLDEGAVLPDLIDDLRLSLEIAAIH
HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RLAVVLSRGLLERDPLSEKVHHGKAAFALTALGGIAATLARRPFRGRTVRAAAQGIRS
HHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]