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The map label for this gene is ydhC [H]

Identifier: 170751472

GI number: 170751472

Start: 5411969

End: 5412622

Strand: Reverse

Name: ydhC [H]

Synonym: Mrad2831_5092

Alternate gene names: 170751472

Gene position: 5412622-5411969 (Counterclockwise)

Preceding gene: 170751475

Following gene: 170751464

Centisome position: 89.06

GC content: 74.77

Gene sequence:

>654_bases
ATGAAGGCCAGCGAAGCGGAGCGCTCCAGCGGCGCCGGCGCCTATGAGCGGCTGCTGCGGGCGATCGAGGAGGGCGAACT
CGCGCCCGGCAGCCGCCTGCGCGAGGCCGAACTCGCCGAGCGGTTCCAGATCAGCCGCACGCCGGTGCGGGAAGCCCTCG
GCCGGCTGGAGGCGCAGGGACTCGTCGCCCACGAGCCGCATCGCGGCGCCAGCGTGGCGCAGCTCGACTACGGCCAGGTG
AGCGAGCTCTACGACCTGCGCGAGGTGCTGGAGGGGACGGCCGCGCGCCTCGCGGCGATCCACGCCAGCGCGGTCGAGAC
CGAGATCCTGGAGGAGATGGTCGCCCGGGACCGGACGCTGCTCGGGGACGCGCCCGCGCTGGCCCGGACCAACCGGCTGT
TCCACCGGCAGATCCACGGGGCGGCGCGCAACCGCTTCCTGCAGAGCACGCTGGAGACGATGCGGCTGTCGCTGGTGCTG
CTGCCGGGCGCCACAACCCTGGCGGCCCCGGATCGCGCCGCGGAGTCGCTCGCCGAGCACGCCGCCATCGTGGCGGCGAT
CCGGGTCCACGACGGGGATGCCGCCGAGGCCGCCGCCCGGGCCCATATCCGCGCCGCCTTCAAGGCGCGGATCCGGATCT
GGCAGGAGAGCTGA

Upstream 100 bases:

>100_bases
ACCGGCCTCTCTCGCCTCATTGTATACGACTGCATGCAATTGGCGGCAAGCGTTTCGGCCCCCTCGGTTTCGCGCTATGG
CCGAGCGAGGAGAGCCGGAC

Downstream 100 bases:

>100_bases
GCGGCCCCGGCCCTCAGGCGTGGGCTGGCACGCGCTCCAGTCCCGCCCGGCCCCGGAACAGGGCGAGCGTCGCGACGATG
CCGCAGGCGGCCGCCGCCAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKASEAERSSGAGAYERLLRAIEEGELAPGSRLREAELAERFQISRTPVREALGRLEAQGLVAHEPHRGASVAQLDYGQV
SELYDLREVLEGTAARLAAIHASAVETEILEEMVARDRTLLGDAPALARTNRLFHRQIHGAARNRFLQSTLETMRLSLVL
LPGATTLAAPDRAAESLAEHAAIVAAIRVHDGDAAEAAARAHIRAAFKARIRIWQES

Sequences:

>Translated_217_residues
MKASEAERSSGAGAYERLLRAIEEGELAPGSRLREAELAERFQISRTPVREALGRLEAQGLVAHEPHRGASVAQLDYGQV
SELYDLREVLEGTAARLAAIHASAVETEILEEMVARDRTLLGDAPALARTNRLFHRQIHGAARNRFLQSTLETMRLSLVL
LPGATTLAAPDRAAESLAEHAAIVAAIRVHDGDAAEAAARAHIRAAFKARIRIWQES
>Mature_217_residues
MKASEAERSSGAGAYERLLRAIEEGELAPGSRLREAELAERFQISRTPVREALGRLEAQGLVAHEPHRGASVAQLDYGQV
SELYDLREVLEGTAARLAAIHASAVETEILEEMVARDRTLLGDAPALARTNRLFHRQIHGAARNRFLQSTLETMRLSLVL
LPGATTLAAPDRAAESLAEHAAIVAAIRVHDGDAAEAAARAHIRAAFKARIRIWQES

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=210, Percent_Identity=29.0476190476191, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23592; Mature: 23592

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASEAERSSGAGAYERLLRAIEEGELAPGSRLREAELAERFQISRTPVREALGRLEAQG
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
LVAHEPHRGASVAQLDYGQVSELYDLREVLEGTAARLAAIHASAVETEILEEMVARDRTL
CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LGDAPALARTNRLFHRQIHGAARNRFLQSTLETMRLSLVLLPGATTLAAPDRAAESLAEH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHCCCHHHHHHHHHH
AAIVAAIRVHDGDAAEAAARAHIRAAFKARIRIWQES
HHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKASEAERSSGAGAYERLLRAIEEGELAPGSRLREAELAERFQISRTPVREALGRLEAQG
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
LVAHEPHRGASVAQLDYGQVSELYDLREVLEGTAARLAAIHASAVETEILEEMVARDRTL
CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LGDAPALARTNRLFHRQIHGAARNRFLQSTLETMRLSLVLLPGATTLAAPDRAAESLAEH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHCCCHHHHHHHHHH
AAIVAAIRVHDGDAAEAAARAHIRAAFKARIRIWQES
HHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]