Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 170748536

GI number: 170748536

Start: 2254323

End: 2255024

Strand: Reverse

Name: ydfH [C]

Synonym: Mrad2831_2118

Alternate gene names: 170748536

Gene position: 2255024-2254323 (Counterclockwise)

Preceding gene: 170748541

Following gene: 170748535

Centisome position: 37.1

GC content: 73.5

Gene sequence:

>702_bases
TTGGCCGGATTGGAATTTGCGGGCCGCGGGCGCGCGACGCCGGCGGACGCGCCGAGGCCGCGCTCGCTCGCCGAGACCGC
CTACGACGCCATCGAGCAGATGATCATCACCCGCCGCCTCGCGCCCGGCGCCATGGTCTCAGAGGGCGAACTCGGCGCCG
AGCTGGGCCTCGGCCGGACCCCGGTCCGCGAGGCGCTGGCGCGGCTGAAGACGATCGGGTTCGTGGAGGTCCACCCGCGC
CGCGGCGTCCTCGTCACCCAGGTCGACATCATCAAGCACCTCGAACTGCTGGAGGTGCGGCGCCCCCTCGACGAGACCGT
GGCCCGCTGCGCCATCGCGCGCGCCACCGAGGCCGACGTGGCGCGGCTGCTGGACTGCGTCGGCGGGCTGCGCAGCACCG
CGGAGGCCCGTGATCGAGAAGCGTATTTCCGGCACAAGCGCGCCCTGCACGAGGGCCTGGTCGGCGCCGCCCACAACCCG
ACGCTCACCGGCACCATGGCGGCGCTCCACGCGCAGTCGCGACGGTTCTGGTACACCTACGAGCCGTCGGCGAGCTTCCC
GGACTGCGCCGCGATCCACGCGGCGATCGTGTCGGGCATCGCGGCGCGGGACGCGGGTACGGCCCTTGCCGGGATCGGGA
CGCTGTTCGACTTTCTCGACCAGATGACCCGCCGGGCCCTCGACCGGCGGCCCCTCGTCTGA

Upstream 100 bases:

>100_bases
CGCAGACTGATATCCCAAGTCTTGAGTAACGCGCCGCGCGGCGCCATTGTCAACCGGCGCAGGTTGCGACGGATACGGGC
ACATATCGACGGGGAAGTCC

Downstream 100 bases:

>100_bases
CAGGTTGACCGCCCCGAACCCGTCCCTATCCTGAAACTGGGATATCAGACGCAGCTCAGCGGCGGGCGGATCCACGGCCG
ATCCCGGCACCACGCCCCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MAGLEFAGRGRATPADAPRPRSLAETAYDAIEQMIITRRLAPGAMVSEGELGAELGLGRTPVREALARLKTIGFVEVHPR
RGVLVTQVDIIKHLELLEVRRPLDETVARCAIARATEADVARLLDCVGGLRSTAEARDREAYFRHKRALHEGLVGAAHNP
TLTGTMAALHAQSRRFWYTYEPSASFPDCAAIHAAIVSGIAARDAGTALAGIGTLFDFLDQMTRRALDRRPLV

Sequences:

>Translated_233_residues
MAGLEFAGRGRATPADAPRPRSLAETAYDAIEQMIITRRLAPGAMVSEGELGAELGLGRTPVREALARLKTIGFVEVHPR
RGVLVTQVDIIKHLELLEVRRPLDETVARCAIARATEADVARLLDCVGGLRSTAEARDREAYFRHKRALHEGLVGAAHNP
TLTGTMAALHAQSRRFWYTYEPSASFPDCAAIHAAIVSGIAARDAGTALAGIGTLFDFLDQMTRRALDRRPLV
>Mature_232_residues
AGLEFAGRGRATPADAPRPRSLAETAYDAIEQMIITRRLAPGAMVSEGELGAELGLGRTPVREALARLKTIGFVEVHPRR
GVLVTQVDIIKHLELLEVRRPLDETVARCAIARATEADVARLLDCVGGLRSTAEARDREAYFRHKRALHEGLVGAAHNPT
LTGTMAALHAQSRRFWYTYEPSASFPDCAAIHAAIVSGIAARDAGTALAGIGTLFDFLDQMTRRALDRRPLV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25257; Mature: 25126

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLEFAGRGRATPADAPRPRSLAETAYDAIEQMIITRRLAPGAMVSEGELGAELGLGRT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC
PVREALARLKTIGFVEVHPRRGVLVTQVDIIKHLELLEVRRPLDETVARCAIARATEADV
HHHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHH
ARLLDCVGGLRSTAEARDREAYFRHKRALHEGLVGAAHNPTLTGTMAALHAQSRRFWYTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEE
EPSASFPDCAAIHAAIVSGIAARDAGTALAGIGTLFDFLDQMTRRALDRRPLV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AGLEFAGRGRATPADAPRPRSLAETAYDAIEQMIITRRLAPGAMVSEGELGAELGLGRT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC
PVREALARLKTIGFVEVHPRRGVLVTQVDIIKHLELLEVRRPLDETVARCAIARATEADV
HHHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHH
ARLLDCVGGLRSTAEARDREAYFRHKRALHEGLVGAAHNPTLTGTMAALHAQSRRFWYTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEE
EPSASFPDCAAIHAAIVSGIAARDAGTALAGIGTLFDFLDQMTRRALDRRPLV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]