Definition | Escherichia coli SMS-3-5 chromosome, complete genome. |
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Accession | NC_010498 |
Length | 5,068,389 |
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The map label for this gene is ypjA [H]
Identifier: 170681171
GI number: 170681171
Start: 1997802
End: 1998128
Strand: Reverse
Name: ypjA [H]
Synonym: EcSMS35_1976
Alternate gene names: 170681171
Gene position: 1998128-1997802 (Counterclockwise)
Preceding gene: 170683308
Following gene: 170681452
Centisome position: 39.42
GC content: 51.68
Gene sequence:
>327_bases ATGGGGTCGAAATCAGTCGATACCCGCAGTATATATCGTGAACTGGGCGCAACGCTGAGTTACAACATGCGTCTGGGTAA CGGTATGGAAGTTGAGCCGTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAAGTGAATAATG ACGGTAATTTTGTCAATGATTTGTCGGGCAGACGTGGAATATATCAGGCAGGTATTAAAGCCTCATTCAGCAGTTCGTTA AGCGGGCATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGCGAACTGGTC GTTCTGA
Upstream 100 bases:
>100_bases GCGCTGTCTCTTCAGGATCAATCCCCTGGTCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTAAGGTCACTTAGACGCT ACTATCATTTATCCAATGGC
Downstream 100 bases:
>100_bases CCATCAACGATTAAACTGCGCTTCGGCGTAGTTTTCGTTTACAGGGTGTTAAAAGGGAAAATTCTGCGGCAAAAAAAGCC CGCCAGTTACGGCGGGAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MGSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAGIKASFSSSL SGHLGVGYSHGAGVESPWNAVAGANWSF
Sequences:
>Translated_108_residues MGSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAGIKASFSSSL SGHLGVGYSHGAGVESPWNAVAGANWSF >Mature_107_residues GSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAGIKASFSSSLS GHLGVGYSHGAGVESPWNAVAGANWSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
Organism=Escherichia coli, GI87082145, Length=108, Percent_Identity=94.4444444444444, Blast_Score=215, Evalue=5e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR006315 - InterPro: IPR012332 - InterPro: IPR011050 - InterPro: IPR004899 - InterPro: IPR003991 [H]
Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]
EC number: NA
Molecular weight: Translated: 11686; Mature: 11555
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVND CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEECC LSGRRGIYQAGIKASFSSSLSGHLGVGYSHGAGVESPWNAVAGANWSF CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVND CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEECC LSGRRGIYQAGIKASFSSSLSGHLGVGYSHGAGVESPWNAVAGANWSF CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]