Click here to switch to the map view.

The map label for this gene is yiaB [H]

Identifier: 170680413

GI number: 170680413

Start: 3953565

End: 3953906

Strand: Reverse

Name: yiaB [H]

Synonym: EcSMS35_3886

Alternate gene names: 170680413

Gene position: 3953906-3953565 (Counterclockwise)

Preceding gene: 170680828

Following gene: 170679941

Centisome position: 78.01

GC content: 42.69

Gene sequence:

>342_bases
ATGAAAACCTCAAAGACTGTGGCAAAACTATTATTTGTTGTCGGGGCGCTGGTTTATCTGGTTGGGCTATGGATCTCATG
CCCATTGTTAAGTGGAAAAGGCTATTTTCTTGGCGTGTTAATGACAGCAACTTTTGGCAATTATGCATATCTTCGCGCAG
AAAAACTCGGGCAACTGGATGATTTTTTTATCCGCGTCTGCCAGTTGCTGGCGTTAATCACTATCGGTCTCTTGTTTATC
GGTGTTTTAAACGCACCTATCAATGCTTATGAAATGGTGATCTATCCCATCGCCTTTTTTGTCTGCTTGTTTGGTCAAAT
GCGTTTGTTTCGCTCGGCATGA

Upstream 100 bases:

>100_bases
TAGTATGAATTTATTCTGAAAATCATTTGTTAATGGCATTTTTCAGTTTTGTCTTTCGTTGGTTACTCGTAATGTATCGC
TGGTAGATATGGAGATCGTT

Downstream 100 bases:

>100_bases
GCAACATAAACCTCTTACACATTCAGGAATGAAAGGAATACTGTGATGGACAACAAAATATCAACCTATTCACCGGCATT
TAGTATTGTGTCATGGATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFIRVCQLLALITIGLLFI
GVLNAPINAYEMVIYPIAFFVCLFGQMRLFRSA

Sequences:

>Translated_113_residues
MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFIRVCQLLALITIGLLFI
GVLNAPINAYEMVIYPIAFFVCLFGQMRLFRSA
>Mature_113_residues
MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFIRVCQLLALITIGLLFI
GVLNAPINAYEMVIYPIAFFVCLFGQMRLFRSA

Specific function: Unknown

COG id: COG4682

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082293, Length=113, Percent_Identity=95.5752212389381, Blast_Score=218, Evalue=6e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008024 [H]

Pfam domain/function: PF05360 YiaAB [H]

EC number: NA

Molecular weight: Translated: 12556; Mature: 12556

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHH
DFFIRVCQLLALITIGLLFIGVLNAPINAYEMVIYPIAFFVCLFGQMRLFRSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHH
DFFIRVCQLLALITIGLLFIGVLNAPINAYEMVIYPIAFFVCLFGQMRLFRSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6320721; 8041620; 9278503 [H]