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The map label for this gene is sucD [H]

Identifier: 170077512

GI number: 170077512

Start: 920895

End: 921830

Strand: Reverse

Name: sucD [H]

Synonym: SYNPCC7002_A0890

Alternate gene names: 170077512

Gene position: 921830-920895 (Counterclockwise)

Preceding gene: 170077513

Following gene: 170077511

Centisome position: 30.65

GC content: 53.85

Gene sequence:

>936_bases
ATGGCTTGGCACACAAATCACAATATTTTGATTCAAGGGATCCATACGCCCCTCGCCCAATATTATCTCCCCCGGATGGT
CGCCTATGGCACCGAGATTATTGGGGGCGTCAGTGCTGGGGGCGGTGGTGAGACCCTTGACGGCATTCCCATTTTTGATT
TGGTCATGGAAGCCAAGGCCCAGGTCGGCGAGATTACCACCAGTTTGATCTTTGTCGAACCCTTTGAGGTTTTGGATGCG
GCCTTTGAGGCGATCGCCGCCGGGATTAAACAACTAATCATCGTTTCTGCGGGAGTGCCGCCCCTGGATATGGTGCGCCT
GCTCTGCCAAGCCCAACAAGAAGAGGTGCAGATCCTAGGGCCAGGGAGCAGTGGACTCGTGATTCCGGGGCAACTGTGGC
TGGGGACAAGCTTCGTTAATCATTTCCAACCCGGTGAAGTTGCGCTTCTCAGTCGGTTTAGTAGCCTCTCCCAGGAAGTT
GCAATTCTCCTCAATCAAGCGGGTTTAGGTCAATCCTATGTGGTGGATGTGGGCAACGCCGATCTGCCGGGTTCCCATTT
TGCCCAGTGGCTCCACTACCTCGATCAAGATCCCCAAACCCAGGCGATCGCCCTTTTAGGTCGTTATGGTTCCCAAGAAG
AAATCGATCTGATTCCTCTGATCCGCGACCAGATCCAAACCCCCGTCGTTACCTATCTCTGTGGCAGTCACGCGCCTATC
CAGCGCAGTTGCTACGATGCCGGAACCATTATTGCTAACCAACTTTCCTACTGCATTAGCGACACCTACACCCCTGCGGA
AATGCACAGCGCCTTTAAACGGGAAAAACTCGCCTTTGGCCGCAATCTTAAAGAAATTCCGACCCTGATCAAAAAAGCCC
TCCAACCCCCACGCAGTCGCAGCCGTCGCCCTAAAAATGCTCCCACGACCCCTTAA

Upstream 100 bases:

>100_bases
GATTTAGAGGCCGCCGTCAAACAGGCGATCGCCCTCAGTAAACCCGGAACCTAAAACGCCTTTCAACTTTTCTCACACAC
AGGACTTAGACACAACGGCA

Downstream 100 bases:

>100_bases
ATTTGCACCGCTTAGATCCTATCCTCAGCATCAGATCTAAGATAAACTTGGCAACCGAAATGCTCAGCATCCCCGACATC
CATGGCACAAATCCTTGACG

Product: succinyl-CoA synthetase, alpha chain

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit alpha; SCS-alpha [H]

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MAWHTNHNILIQGIHTPLAQYYLPRMVAYGTEIIGGVSAGGGGETLDGIPIFDLVMEAKAQVGEITTSLIFVEPFEVLDA
AFEAIAAGIKQLIIVSAGVPPLDMVRLLCQAQQEEVQILGPGSSGLVIPGQLWLGTSFVNHFQPGEVALLSRFSSLSQEV
AILLNQAGLGQSYVVDVGNADLPGSHFAQWLHYLDQDPQTQAIALLGRYGSQEEIDLIPLIRDQIQTPVVTYLCGSHAPI
QRSCYDAGTIIANQLSYCISDTYTPAEMHSAFKREKLAFGRNLKEIPTLIKKALQPPRSRSRRPKNAPTTP

Sequences:

>Translated_311_residues
MAWHTNHNILIQGIHTPLAQYYLPRMVAYGTEIIGGVSAGGGGETLDGIPIFDLVMEAKAQVGEITTSLIFVEPFEVLDA
AFEAIAAGIKQLIIVSAGVPPLDMVRLLCQAQQEEVQILGPGSSGLVIPGQLWLGTSFVNHFQPGEVALLSRFSSLSQEV
AILLNQAGLGQSYVVDVGNADLPGSHFAQWLHYLDQDPQTQAIALLGRYGSQEEIDLIPLIRDQIQTPVVTYLCGSHAPI
QRSCYDAGTIIANQLSYCISDTYTPAEMHSAFKREKLAFGRNLKEIPTLIKKALQPPRSRSRRPKNAPTTP
>Mature_310_residues
AWHTNHNILIQGIHTPLAQYYLPRMVAYGTEIIGGVSAGGGGETLDGIPIFDLVMEAKAQVGEITTSLIFVEPFEVLDAA
FEAIAAGIKQLIIVSAGVPPLDMVRLLCQAQQEEVQILGPGSSGLVIPGQLWLGTSFVNHFQPGEVALLSRFSSLSQEVA
ILLNQAGLGQSYVVDVGNADLPGSHFAQWLHYLDQDPQTQAIALLGRYGSQEEIDLIPLIRDQIQTPVVTYLCGSHAPIQ
RSCYDAGTIIANQLSYCISDTYTPAEMHSAFKREKLAFGRNLKEIPTLIKKALQPPRSRSRRPKNAPTTP

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the succinate/malate CoA ligase alpha subunit family [H]

Homologues:

Organism=Homo sapiens, GI109452591, Length=242, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI38569423, Length=259, Percent_Identity=24.3243243243243, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI38569421, Length=259, Percent_Identity=24.3243243243243, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI1786949, Length=291, Percent_Identity=33.3333333333333, Blast_Score=163, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17553126, Length=249, Percent_Identity=29.718875502008, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17550194, Length=249, Percent_Identity=28.1124497991968, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17557344, Length=200, Percent_Identity=26, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551266, Length=200, Percent_Identity=25.5, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324716, Length=240, Percent_Identity=27.5, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21356559, Length=253, Percent_Identity=28.8537549407115, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28574296, Length=293, Percent_Identity=27.3037542662116, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281363477, Length=202, Percent_Identity=26.2376237623762, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281363475, Length=202, Percent_Identity=26.2376237623762, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281363473, Length=202, Percent_Identity=26.2376237623762, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017440
- InterPro:   IPR003781
- InterPro:   IPR005810
- InterPro:   IPR005811
- InterPro:   IPR016040
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: =6.2.1.5 [H]

Molecular weight: Translated: 33768; Mature: 33637

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWHTNHNILIQGIHTPLAQYYLPRMVAYGTEIIGGVSAGGGGETLDGIPIFDLVMEAKA
CCEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
QVGEITTSLIFVEPFEVLDAAFEAIAAGIKQLIIVSAGVPPLDMVRLLCQAQQEEVQILG
HHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEC
PGSSGLVIPGQLWLGTSFVNHFQPGEVALLSRFSSLSQEVAILLNQAGLGQSYVVDVGNA
CCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
DLPGSHFAQWLHYLDQDPQTQAIALLGRYGSQEEIDLIPLIRDQIQTPVVTYLCGSHAPI
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCH
QRSCYDAGTIIANQLSYCISDTYTPAEMHSAFKREKLAFGRNLKEIPTLIKKALQPPRSR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
SRRPKNAPTTP
CCCCCCCCCCC
>Mature Secondary Structure 
AWHTNHNILIQGIHTPLAQYYLPRMVAYGTEIIGGVSAGGGGETLDGIPIFDLVMEAKA
CEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
QVGEITTSLIFVEPFEVLDAAFEAIAAGIKQLIIVSAGVPPLDMVRLLCQAQQEEVQILG
HHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEC
PGSSGLVIPGQLWLGTSFVNHFQPGEVALLSRFSSLSQEVAILLNQAGLGQSYVVDVGNA
CCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
DLPGSHFAQWLHYLDQDPQTQAIALLGRYGSQEEIDLIPLIRDQIQTPVVTYLCGSHAPI
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCH
QRSCYDAGTIIANQLSYCISDTYTPAEMHSAFKREKLAFGRNLKEIPTLIKKALQPPRSR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
SRRPKNAPTTP
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]