Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

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The map label for this gene is 170077479

Identifier: 170077479

GI number: 170077479

Start: 884446

End: 886068

Strand: Reverse

Name: 170077479

Synonym: SYNPCC7002_A0857

Alternate gene names: NA

Gene position: 886068-884446 (Counterclockwise)

Preceding gene: 170077480

Following gene: 170077478

Centisome position: 29.46

GC content: 52.43

Gene sequence:

>1623_bases
TTGTCAGTAACTGCCATGCTTCGTCTTACGGAAATCAAACTGCCCCTCGACCACAGCCCAGAGGCGATCGCCCAGGCCAT
TTGCCAGAAGTTAAAAATTCAGCCGGATGACTTGCTGGAATATCAGATTTTTAAACGCAGCTACGATGCCCGTAAAAAGA
GCAATATTTACCTCGTCTACATCTTTGATGTGCACACCACGAAGGATCAAGCTTTGCTAAAACGCTTCAAAAAAGATCCC
CATGTGCTCCCCACTCCAGACATGAGTTACAAAATGGTGGCCCAAGCACCGGCAGATTGTGCGACGCGGCCCATCGTCAT
CGGCATGGGGCCTTGTGGGATGTTTGCGGGATTAATGCTAGCCAAAATGGGCTTTCGGCCGATTGTGTTAGAACGGGGAA
AAACCGTCAATGAGCGCACCAAAGACACCTTTAATTTCTGGAAAAAGAAGGGAGAATTTAACCCCGAATCTAATGCTCAA
TTTGGAGAAGGAGGCGCAGGGACATTCTCCGATGGGAAGCTCTACAGCCAGGTGCGCGATCGCCACCATTACAAACGCAA
AGTCCTCGAAGAATTCGTCGCCGCCGGGGCCAATCCCGAAATCCTCTACATCGCCAAGCCCCACATCGGCACCTTTAAAC
TCGTGGGCATCGTCCAAAGCATTCGCAAAACCATCGAATCCCTCGGCGGCGAAATTCGTTTCCAAAGCAAGGTCAAAACC
CTCGAACTAGAAAACCATCAGGTCAAAGGCGTCACCCTCGAAAATGGCGAATTTATTCCCAGTTCCCACGTGGTGCTGGC
CATGGGCCACAGTGCGCGGGATACCTTCCAAATGCTCCATGACCAGGGCGTTTACATCGAACCCAAGCCCTTTTCCATTG
GCTTTCGCATTGAACATCCCCAACCCCTGATCGATGAATGTCGCTACGGGGAATTTGCTGGCAATAAGATTCTCGGTGCC
GCCGATTACAAGCTCGTCCACCACTGTCAAAATGGGCGCTCGGTCTATAGCTTTTGTATGTGTCCGGGGGGATTGGTGAT
TGGGGCCACCTCCGAGGCAGGCAAAGTCGTCACCAACGGCATGAGCCAATATTCCCGCAACGAACGTAACGCCAATGCGG
GGATCGTTGTCGGCATTACCCCAGAAGAGGATTTTCCAGGTCATCCCCTCGCAGGCATTGATCTCCAACGAAAATTAGAA
GCCAGGGCCTTTGAACTGGGTGGTGGTGATTACAGCGCGCCGGGTCAACTGGTGGGGGACTTCCTCGCGGGTTGTTCTTC
TGAGTCGTTGGGCAAAGTAAAACCTTCCTATGCCCCGGGAGTTAAGCTAACGGATCTCAGCACCGCGCTCCCGGACTACG
CCATCGAAGCGATTCGGGAAGCTCTACCCGCTTTTGACAAACAAATTAAGGGGTTTGCCATGGCTGAGGCGATGTTAACG
GGGGTGGAAACGCGCACCTCTTCGCCAATTCGCATTAAACGGGGCAAAGATTACCAAAGTATTAATACCCAGGGCCTCTA
TCCTGCGGGGGAGGGAGCTGGTTATGCAGGGGGCATTCTCTCGGCAGCCATTGATGGGGTCAAAGTGGCGGAGGCGATCG
CCTTAGATATTGTCAATGAGTAA

Upstream 100 bases:

>100_bases
ATCTTCTGTTTATTAAGTCTGGGTCTTCCTCGCCATTGTGGGGAAGATTTTTTTCGTTTTTAATAAGAATCCCCGGCCCC
AGGGATCATCACCGCTATTT

Downstream 100 bases:

>100_bases
CAATTCAGCCAAATCGCGCTTTTTTTTCTAAAACATTTTCACTACACTGACACTACAACTTTTGATGTTTTGCCTCATTC
CGAGGACAGATATTTAGTAA

Product: putative FAD-dependent dehydrogenase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MSVTAMLRLTEIKLPLDHSPEAIAQAICQKLKIQPDDLLEYQIFKRSYDARKKSNIYLVYIFDVHTTKDQALLKRFKKDP
HVLPTPDMSYKMVAQAPADCATRPIVIGMGPCGMFAGLMLAKMGFRPIVLERGKTVNERTKDTFNFWKKKGEFNPESNAQ
FGEGGAGTFSDGKLYSQVRDRHHYKRKVLEEFVAAGANPEILYIAKPHIGTFKLVGIVQSIRKTIESLGGEIRFQSKVKT
LELENHQVKGVTLENGEFIPSSHVVLAMGHSARDTFQMLHDQGVYIEPKPFSIGFRIEHPQPLIDECRYGEFAGNKILGA
ADYKLVHHCQNGRSVYSFCMCPGGLVIGATSEAGKVVTNGMSQYSRNERNANAGIVVGITPEEDFPGHPLAGIDLQRKLE
ARAFELGGGDYSAPGQLVGDFLAGCSSESLGKVKPSYAPGVKLTDLSTALPDYAIEAIREALPAFDKQIKGFAMAEAMLT
GVETRTSSPIRIKRGKDYQSINTQGLYPAGEGAGYAGGILSAAIDGVKVAEAIALDIVNE

Sequences:

>Translated_540_residues
MSVTAMLRLTEIKLPLDHSPEAIAQAICQKLKIQPDDLLEYQIFKRSYDARKKSNIYLVYIFDVHTTKDQALLKRFKKDP
HVLPTPDMSYKMVAQAPADCATRPIVIGMGPCGMFAGLMLAKMGFRPIVLERGKTVNERTKDTFNFWKKKGEFNPESNAQ
FGEGGAGTFSDGKLYSQVRDRHHYKRKVLEEFVAAGANPEILYIAKPHIGTFKLVGIVQSIRKTIESLGGEIRFQSKVKT
LELENHQVKGVTLENGEFIPSSHVVLAMGHSARDTFQMLHDQGVYIEPKPFSIGFRIEHPQPLIDECRYGEFAGNKILGA
ADYKLVHHCQNGRSVYSFCMCPGGLVIGATSEAGKVVTNGMSQYSRNERNANAGIVVGITPEEDFPGHPLAGIDLQRKLE
ARAFELGGGDYSAPGQLVGDFLAGCSSESLGKVKPSYAPGVKLTDLSTALPDYAIEAIREALPAFDKQIKGFAMAEAMLT
GVETRTSSPIRIKRGKDYQSINTQGLYPAGEGAGYAGGILSAAIDGVKVAEAIALDIVNE
>Mature_539_residues
SVTAMLRLTEIKLPLDHSPEAIAQAICQKLKIQPDDLLEYQIFKRSYDARKKSNIYLVYIFDVHTTKDQALLKRFKKDPH
VLPTPDMSYKMVAQAPADCATRPIVIGMGPCGMFAGLMLAKMGFRPIVLERGKTVNERTKDTFNFWKKKGEFNPESNAQF
GEGGAGTFSDGKLYSQVRDRHHYKRKVLEEFVAAGANPEILYIAKPHIGTFKLVGIVQSIRKTIESLGGEIRFQSKVKTL
ELENHQVKGVTLENGEFIPSSHVVLAMGHSARDTFQMLHDQGVYIEPKPFSIGFRIEHPQPLIDECRYGEFAGNKILGAA
DYKLVHHCQNGRSVYSFCMCPGGLVIGATSEAGKVVTNGMSQYSRNERNANAGIVVGITPEEDFPGHPLAGIDLQRKLEA
RAFELGGGDYSAPGQLVGDFLAGCSSESLGKVKPSYAPGVKLTDLSTALPDYAIEAIREALPAFDKQIKGFAMAEAMLTG
VETRTSSPIRIKRGKDYQSINTQGLYPAGEGAGYAGGILSAAIDGVKVAEAIALDIVNE

Specific function: Unknown

COG id: COG2509

COG function: function code R; Uncharacterized FAD-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004792 [H]

Pfam domain/function: PF03486 HI0933_like [H]

EC number: NA

Molecular weight: Translated: 59037; Mature: 58905

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTAMLRLTEIKLPLDHSPEAIAQAICQKLKIQPDDLLEYQIFKRSYDARKKSNIYLVY
CCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
IFDVHTTKDQALLKRFKKDPHVLPTPDMSYKMVAQAPADCATRPIVIGMGPCGMFAGLML
EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHH
AKMGFRPIVLERGKTVNERTKDTFNFWKKKGEFNPESNAQFGEGGAGTFSDGKLYSQVRD
HHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RHHYKRKVLEEFVAAGANPEILYIAKPHIGTFKLVGIVQSIRKTIESLGGEIRFQSKVKT
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEE
LELENHQVKGVTLENGEFIPSSHVVLAMGHSARDTFQMLHDQGVYIEPKPFSIGFRIEHP
EEECCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEECCCCCEEEEEECCC
QPLIDECRYGEFAGNKILGAADYKLVHHCQNGRSVYSFCMCPGGLVIGATSEAGKVVTNG
CCHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEHEEECCCCEEEECCCCCCHHHHHH
MSQYSRNERNANAGIVVGITPEEDFPGHPLAGIDLQRKLEARAFELGGGDYSAPGQLVGD
HHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCCHHHHHH
FLAGCSSESLGKVKPSYAPGVKLTDLSTALPDYAIEAIREALPAFDKQIKGFAMAEAMLT
HHHCCCCCCCCCCCCCCCCCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVETRTSSPIRIKRGKDYQSINTQGLYPAGEGAGYAGGILSAAIDGVKVAEAIALDIVNE
HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVTAMLRLTEIKLPLDHSPEAIAQAICQKLKIQPDDLLEYQIFKRSYDARKKSNIYLVY
CCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
IFDVHTTKDQALLKRFKKDPHVLPTPDMSYKMVAQAPADCATRPIVIGMGPCGMFAGLML
EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHH
AKMGFRPIVLERGKTVNERTKDTFNFWKKKGEFNPESNAQFGEGGAGTFSDGKLYSQVRD
HHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RHHYKRKVLEEFVAAGANPEILYIAKPHIGTFKLVGIVQSIRKTIESLGGEIRFQSKVKT
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEE
LELENHQVKGVTLENGEFIPSSHVVLAMGHSARDTFQMLHDQGVYIEPKPFSIGFRIEHP
EEECCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEECCCCCEEEEEECCC
QPLIDECRYGEFAGNKILGAADYKLVHHCQNGRSVYSFCMCPGGLVIGATSEAGKVVTNG
CCHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEHEEECCCCEEEECCCCCCHHHHHH
MSQYSRNERNANAGIVVGITPEEDFPGHPLAGIDLQRKLEARAFELGGGDYSAPGQLVGD
HHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCCHHHHHH
FLAGCSSESLGKVKPSYAPGVKLTDLSTALPDYAIEAIREALPAFDKQIKGFAMAEAMLT
HHHCCCCCCCCCCCCCCCCCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVETRTSSPIRIKRGKDYQSINTQGLYPAGEGAGYAGGILSAAIDGVKVAEAIALDIVNE
HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8396545 [H]