| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is comEc [H]
Identifier: 170077449
GI number: 170077449
Start: 854319
End: 856511
Strand: Reverse
Name: comEc [H]
Synonym: SYNPCC7002_A0827
Alternate gene names: 170077449
Gene position: 856511-854319 (Counterclockwise)
Preceding gene: 170077450
Following gene: 170077448
Centisome position: 28.47
GC content: 51.39
Gene sequence:
>2193_bases ATGGTTTTTCAGCGTGGTATCGTCCTCTGTCTTGGATATCTCATTGGTCTTGGTTTAACGGGATTTTGGGGGCCACTGAA CCCGCAACCTTCTTTGCTGCAGTGGGGGTTATTGGTTGGGGCGATCGCCTTGGGGACAATCCTCGCAACAATTTTTCTTC CCCGTTATCTCTGGCAAGTACCGCGCCACTTCTGGCCGATGCTGGGATTGGTGATGCTGCTGGCTGTAGTTTATAGTCAA GGGCGTCTACCCCGTCCGGCGACCAATGGTCTCTATAGCCTCACCCAAAGTCAGCCCAGTTTATTACAAAGTCCTGTAGA AATCCAAGGGCAAATTTACCGCTCCATCACCACACAAGAGCCAAATAAACAACGGTTTTGGTTTCGGGTGCAAAATGTAA ACCTAGGGCAAAATGTTGCTCCTCAAAAAGAAAATTTATATGTCACGTTAAGCGGAGATTTTTCTCAATTTAAGCTTGGC GATCGCCTCCAGTTGACAGGGCGTTTATACAAACCCCAACCGCCCCAAAATAAATTTGCCTTCAGTTTTCCGGATTACCT ACGCCAAAACAATACTTTTCTGGGTTTTAGTGCTTGGGAAGCGGCATTAACCCGACGGGAAGAGTCGCTCACAGAAATAC TGCGCCAACGGATTCAACGGAGTCATCGGGAATTTTTACCAGACAAACCCGCTAGCTTGCTCAGTTCTATGGTGTTGGGG CGTCAGACCACCAATTTAGACCCCGAAATTTATGATTTGTGGGTCAAAGCGGGCTTGGCCTATACCGTCGCCGCGTCTGG GTTCCATGTGTCGCTGTTGTTGGGGGTCGTGCTGTGGCTCCTACGAAATCAAGAAGAGAAAACACAATTCTATGGCGCGG CAGGAACTTTACTTGGTTACGTGCTGCTGACGGGTTTCCAGGCTTCGATTCTCCGGGCGGCCTTAATGGGGATGGGGGGT TTAGTGGCCCTAGTACTTGATCGCAAGGTCAAGCCCATTGGTCTTTTGCTAATGACGGCAACGGTGTTACTCCTGATTAA ACCGCTATGGCTTTGGGACTTGGGCTTTCAACTCAGTTTTCTGGCAACCTTTGGCCTATTTACGACCCTAGAGCCACTTC AAAAAAAGCTAGATTTTCTTCCCCCAACGGTGGCAACGGCGATCGCCATTCCCATGGCCGCCAGTATTTGGACATTACCC TTACTGGCCTACAAATTTAATGTGATCGCCACCTACTCGATCCCCACCAGCATTGTGCTATCGCCCGTCATTGGCCTAGT CAGTTTGGGCGGTATGGTCAGCGGTGCCGTCGGTCTATTAATCCCAGAACTCGGTGGGGCGATCGCCTATGGGCTGGGTT GGCCTTTACGGGGGATGATTTGGCTCGTGGAACAGGTTGTGGCGTTGCCTGGGAGCCAAGCGAGTGTCGCCGCGCTACCT TTGCCGCAACTGCTTGTTTTCTATGGAGTGATGCTGTTGATTTGGCGCTCTCCCTGGGCCCAAAAACAGGCCAGGCCCCT CATCGGCGGTTTACTAATCCTTTTCGTTACAGTGCTGGTTTATCGTCACTTCAATACCACTCAAGTGACGATTTTTGGCG ATCGCCAAACCCCTATAATTGTCGCTCAAGCGGGCGGTAAAACCCTGGTAATTAATGTCGGTTCCCCTGGATTTTGGGAA TATACCCTCGAACCCTTCCTGCGTCGCAGCGGCCTCAATCAAATTGATGGCTTGCTTTCCCTGACGCCCCCCGACCCCGC CGCCCAAACCGTTGATTTTTCCGGTGAACTGCCTATCAAACAGCGTTTTTCACTCCCTCAATCTCCAGATAAGGTTACAA TCCTCCGCCCCCTCGAACCGAAACGCTTCGGCCCGATCCGCTTGCAACTCCTCCAGGAAGATTTGCATATTTTAGAAATT CGTCTCCAAGGCCAAGCTTTTTATCTCCTCAGCAAACAAACCGCCGACGCCGACTTTATCGCCCAGTGGAATCCAGCCAT TCTCATTGCAAAGGCCGCTGATCTCGATTTCAAAATCTGGCAGACCCTCAAACCCCAAAAGGCGATCGCCATTGGCTCTC CCCAGGGTCATTTTTTGGCCCCCAATCGCATCGTTTACTGGAGCGAAACCGACGGCACGATTCAATGGACGCCCCGCCAG GGTTTAAGCAGCCTTGCGCCCAATCTCCCCTAG
Upstream 100 bases:
>100_bases AGTCCTTCTACCGTTTCCTCCCCAATTCCCATGGATAAAGTCGAGCTAAGCTTGTGGGCAAGTTTTTGTACCTTTGCTTG CAGATTTGCTTTCTTTGCCT
Downstream 100 bases:
>100_bases GCCCAAAGCCTTTTCCTGAGCCAGTTTATGCCCCAAAGACTGTGGTAAAATAGGAGTCTATTTGACCGAAAAAATCCAGT TAAAAAACGCAAAATAATCT
Product: competence protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MVFQRGIVLCLGYLIGLGLTGFWGPLNPQPSLLQWGLLVGAIALGTILATIFLPRYLWQVPRHFWPMLGLVMLLAVVYSQ GRLPRPATNGLYSLTQSQPSLLQSPVEIQGQIYRSITTQEPNKQRFWFRVQNVNLGQNVAPQKENLYVTLSGDFSQFKLG DRLQLTGRLYKPQPPQNKFAFSFPDYLRQNNTFLGFSAWEAALTRREESLTEILRQRIQRSHREFLPDKPASLLSSMVLG RQTTNLDPEIYDLWVKAGLAYTVAASGFHVSLLLGVVLWLLRNQEEKTQFYGAAGTLLGYVLLTGFQASILRAALMGMGG LVALVLDRKVKPIGLLLMTATVLLLIKPLWLWDLGFQLSFLATFGLFTTLEPLQKKLDFLPPTVATAIAIPMAASIWTLP LLAYKFNVIATYSIPTSIVLSPVIGLVSLGGMVSGAVGLLIPELGGAIAYGLGWPLRGMIWLVEQVVALPGSQASVAALP LPQLLVFYGVMLLIWRSPWAQKQARPLIGGLLILFVTVLVYRHFNTTQVTIFGDRQTPIIVAQAGGKTLVINVGSPGFWE YTLEPFLRRSGLNQIDGLLSLTPPDPAAQTVDFSGELPIKQRFSLPQSPDKVTILRPLEPKRFGPIRLQLLQEDLHILEI RLQGQAFYLLSKQTADADFIAQWNPAILIAKAADLDFKIWQTLKPQKAIAIGSPQGHFLAPNRIVYWSETDGTIQWTPRQ GLSSLAPNLP
Sequences:
>Translated_730_residues MVFQRGIVLCLGYLIGLGLTGFWGPLNPQPSLLQWGLLVGAIALGTILATIFLPRYLWQVPRHFWPMLGLVMLLAVVYSQ GRLPRPATNGLYSLTQSQPSLLQSPVEIQGQIYRSITTQEPNKQRFWFRVQNVNLGQNVAPQKENLYVTLSGDFSQFKLG DRLQLTGRLYKPQPPQNKFAFSFPDYLRQNNTFLGFSAWEAALTRREESLTEILRQRIQRSHREFLPDKPASLLSSMVLG RQTTNLDPEIYDLWVKAGLAYTVAASGFHVSLLLGVVLWLLRNQEEKTQFYGAAGTLLGYVLLTGFQASILRAALMGMGG LVALVLDRKVKPIGLLLMTATVLLLIKPLWLWDLGFQLSFLATFGLFTTLEPLQKKLDFLPPTVATAIAIPMAASIWTLP LLAYKFNVIATYSIPTSIVLSPVIGLVSLGGMVSGAVGLLIPELGGAIAYGLGWPLRGMIWLVEQVVALPGSQASVAALP LPQLLVFYGVMLLIWRSPWAQKQARPLIGGLLILFVTVLVYRHFNTTQVTIFGDRQTPIIVAQAGGKTLVINVGSPGFWE YTLEPFLRRSGLNQIDGLLSLTPPDPAAQTVDFSGELPIKQRFSLPQSPDKVTILRPLEPKRFGPIRLQLLQEDLHILEI RLQGQAFYLLSKQTADADFIAQWNPAILIAKAADLDFKIWQTLKPQKAIAIGSPQGHFLAPNRIVYWSETDGTIQWTPRQ GLSSLAPNLP >Mature_730_residues MVFQRGIVLCLGYLIGLGLTGFWGPLNPQPSLLQWGLLVGAIALGTILATIFLPRYLWQVPRHFWPMLGLVMLLAVVYSQ GRLPRPATNGLYSLTQSQPSLLQSPVEIQGQIYRSITTQEPNKQRFWFRVQNVNLGQNVAPQKENLYVTLSGDFSQFKLG DRLQLTGRLYKPQPPQNKFAFSFPDYLRQNNTFLGFSAWEAALTRREESLTEILRQRIQRSHREFLPDKPASLLSSMVLG RQTTNLDPEIYDLWVKAGLAYTVAASGFHVSLLLGVVLWLLRNQEEKTQFYGAAGTLLGYVLLTGFQASILRAALMGMGG LVALVLDRKVKPIGLLLMTATVLLLIKPLWLWDLGFQLSFLATFGLFTTLEPLQKKLDFLPPTVATAIAIPMAASIWTLP LLAYKFNVIATYSIPTSIVLSPVIGLVSLGGMVSGAVGLLIPELGGAIAYGLGWPLRGMIWLVEQVVALPGSQASVAALP LPQLLVFYGVMLLIWRSPWAQKQARPLIGGLLILFVTVLVYRHFNTTQVTIFGDRQTPIIVAQAGGKTLVINVGSPGFWE YTLEPFLRRSGLNQIDGLLSLTPPDPAAQTVDFSGELPIKQRFSLPQSPDKVTILRPLEPKRFGPIRLQLLQEDLHILEI RLQGQAFYLLSKQTADADFIAQWNPAILIAKAADLDFKIWQTLKPQKAIAIGSPQGHFLAPNRIVYWSETDGTIQWTPRQ GLSSLAPNLP
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 80911; Mature: 80911
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFQRGIVLCLGYLIGLGLTGFWGPLNPQPSLLQWGLLVGAIALGTILATIFLPRYLWQV CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PRHFWPMLGLVMLLAVVYSQGRLPRPATNGLYSLTQSQPSLLQSPVEIQGQIYRSITTQE HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHCCCHHHHHHHHHHHCCCC PNKQRFWFRVQNVNLGQNVAPQKENLYVTLSGDFSQFKLGDRLQLTGRLYKPQPPQNKFA CCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCHHCCCCCEEEECCEECCCCCCCCCEE FSFPDYLRQNNTFLGFSAWEAALTRREESLTEILRQRIQRSHREFLPDKPASLLSSMVLG ECCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC RQTTNLDPEIYDLWVKAGLAYTVAASGFHVSLLLGVVLWLLRNQEEKTQFYGAAGTLLGY CCCCCCCHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VLLTGFQASILRAALMGMGGLVALVLDRKVKPIGLLLMTATVLLLIKPLWLWDLGFQLSF HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LATFGLFTTLEPLQKKLDFLPPTVATAIAIPMAASIWTLPLLAYKFNVIATYSIPTSIVL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHH SPVIGLVSLGGMVSGAVGLLIPELGGAIAYGLGWPLRGMIWLVEQVVALPGSQASVAALP HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCC LPQLLVFYGVMLLIWRSPWAQKQARPLIGGLLILFVTVLVYRHFNTTQVTIFGDRQTPII HHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEE VAQAGGKTLVINVGSPGFWEYTLEPFLRRSGLNQIDGLLSLTPPDPAAQTVDFSGELPIK EEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHCCCEECCCCCCCCCEECCCCCCCHH QRFSLPQSPDKVTILRPLEPKRFGPIRLQLLQEDLHILEIRLQGQAFYLLSKQTADADFI HHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCE AQWNPAILIAKAADLDFKIWQTLKPQKAIAIGSPQGHFLAPNRIVYWSETDGTIQWTPRQ ECCCCEEEEEEECCCCHHHHHCCCCCCEEEECCCCCCEECCCEEEEEECCCCEEEECCHH GLSSLAPNLP HHHHHCCCCC >Mature Secondary Structure MVFQRGIVLCLGYLIGLGLTGFWGPLNPQPSLLQWGLLVGAIALGTILATIFLPRYLWQV CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PRHFWPMLGLVMLLAVVYSQGRLPRPATNGLYSLTQSQPSLLQSPVEIQGQIYRSITTQE HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHCCCHHHHHHHHHHHCCCC PNKQRFWFRVQNVNLGQNVAPQKENLYVTLSGDFSQFKLGDRLQLTGRLYKPQPPQNKFA CCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCHHCCCCCEEEECCEECCCCCCCCCEE FSFPDYLRQNNTFLGFSAWEAALTRREESLTEILRQRIQRSHREFLPDKPASLLSSMVLG ECCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC RQTTNLDPEIYDLWVKAGLAYTVAASGFHVSLLLGVVLWLLRNQEEKTQFYGAAGTLLGY CCCCCCCHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VLLTGFQASILRAALMGMGGLVALVLDRKVKPIGLLLMTATVLLLIKPLWLWDLGFQLSF HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LATFGLFTTLEPLQKKLDFLPPTVATAIAIPMAASIWTLPLLAYKFNVIATYSIPTSIVL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHH SPVIGLVSLGGMVSGAVGLLIPELGGAIAYGLGWPLRGMIWLVEQVVALPGSQASVAALP HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCC LPQLLVFYGVMLLIWRSPWAQKQARPLIGGLLILFVTVLVYRHFNTTQVTIFGDRQTPII HHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEE VAQAGGKTLVINVGSPGFWEYTLEPFLRRSGLNQIDGLLSLTPPDPAAQTVDFSGELPIK EEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHCCCEECCCCCCCCCEECCCCCCCHH QRFSLPQSPDKVTILRPLEPKRFGPIRLQLLQEDLHILEIRLQGQAFYLLSKQTADADFI HHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCE AQWNPAILIAKAADLDFKIWQTLKPQKAIAIGSPQGHFLAPNRIVYWSETDGTIQWTPRQ ECCCCEEEEEEECCCCHHHHHCCCCCCEEEECCCCCCEECCCEEEEEECCCCEEEECCHH GLSSLAPNLP HHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]