| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170025477
Identifier: 170025477
GI number: 170025477
Start: 3563516
End: 3564847
Strand: Reverse
Name: 170025477
Synonym: YPK_3260
Alternate gene names: NA
Gene position: 3564847-3563516 (Counterclockwise)
Preceding gene: 170025478
Following gene: 170025476
Centisome position: 76.02
GC content: 36.34
Gene sequence:
>1332_bases ATGACTGTTAGTTATGTCGGGCGAGGAGAGTCACTTTCATGGGTATATGGAGTAGACAATGTGAATATACCAAATTCAGA TGTGGTCGATTCACCTTTTAATGACTTCACTCAATTTGATAATATGGATTTTTCGGCTAATTATAATTCTATTTTATCGA GAGAAAATAAATCGCTAATTACGTCATTTATAAGTGAATGTAATGATAAGGTTAAGAGGTTAAGTGAAGATGAAAATTAT ATTTTAACTCAAAAATATATTTCATCACTGGATGAAATGTGTGAGGAAATAAATAAAAAATTACTTTATTGTCATGATAG TAAAGTATTAAAAAATGTTTTAGATTCGACGCTTCAAAAGCAAACTGAAATGAGTAAATACATAGTGTTACTGGAAGGTG TGCCTTATCGCATTGAACCAAGAGATATCGCAGCTGACATTACGAATGAACGAATAAATGGTGCTATAGAGTTATTGAAT TTTGTTGCCAAGGCTTACCCGAAAATAGCGAAGGAATCCGCTAAGTTGCAGCGATCCCGACCCCATGCCAATTGCAGTGT TGAGACGTTGAATGACTATTTAGAACAGTTAAAAAAAATATTGTCAGGCAAGAAACTACTCAGTAATAGAAGACAACGCT CTTCATCAATTCATTTTAAAGACGCATGGGGTGGCGGTGATAAGTCTGGACGAATAAATGCGCAAAAAAACGTAGAGATT AATAAGAAAATGGAAGGTATCTATATTGGATTCACTCAGCGAACGATAGAGAGTCAGACTGAAAATCAGTCTGTGGTTTT TAAATCATCAAAACATGAGATGGTAGAAAATAAATTAATCTATTTAGCCTCTTTAGCTAATGAGTTGAGTAAGCTAAATG ACTCTATTAGTGATGAGAATTTAAAATATTCTATAAATAAAGTGGTTGGTGAAGTCCTTGAGTTGAAATTGAAGAAAATT CAGAAAATTCAGAAAATGGCGAAAAGTTCGAAATGTAATTTTTCATTTTCTAATCTTAAGAAGGATTTAGCTATGCTGAG TTCGCTTGCGGTAACTGGCATCGCCGCAGGTGTGATACCTACATTTATCGCCACCGGTATAGTGGCTGCAATAGCGCCTA TCTTAGCGGCGTTAGGGTGTGCAATATATGCATTTAATCCACAGCTAAAAGAAACAGAAACCAGTAAATTACTGGATGCG AGCATCAAAGATATCGGGGCGACGTTGGGGAGTGAGCTAAAGGATGAGAAGTTGGGGCGCTTCGAATATCTGCGCCATAA ATATGCCGCTTATAAGTACCGTAAGGCTGCCAAGCACACATTCGATGGCTGA
Upstream 100 bases:
>100_bases GTTACTGATAAGTTTATTATTTTTCTGATAGTTAATAAATTCGTGATCAGTCACCTTTAAAAGGTAAATAAAATACAGGC TGATATTAAAAGGAATATTT
Downstream 100 bases:
>100_bases TCGGCCTTTGTTGTCATCGCACTTCGCGGTAAACTGTCGGTAAGTTTAGGTTCACCAATCAGGAAGCGTTATGCATTGTC CGTTTTGTGCCGCTGTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MTVSYVGRGESLSWVYGVDNVNIPNSDVVDSPFNDFTQFDNMDFSANYNSILSRENKSLITSFISECNDKVKRLSEDENY ILTQKYISSLDEMCEEINKKLLYCHDSKVLKNVLDSTLQKQTEMSKYIVLLEGVPYRIEPRDIAADITNERINGAIELLN FVAKAYPKIAKESAKLQRSRPHANCSVETLNDYLEQLKKILSGKKLLSNRRQRSSSIHFKDAWGGGDKSGRINAQKNVEI NKKMEGIYIGFTQRTIESQTENQSVVFKSSKHEMVENKLIYLASLANELSKLNDSISDENLKYSINKVVGEVLELKLKKI QKIQKMAKSSKCNFSFSNLKKDLAMLSSLAVTGIAAGVIPTFIATGIVAAIAPILAALGCAIYAFNPQLKETETSKLLDA SIKDIGATLGSELKDEKLGRFEYLRHKYAAYKYRKAAKHTFDG
Sequences:
>Translated_443_residues MTVSYVGRGESLSWVYGVDNVNIPNSDVVDSPFNDFTQFDNMDFSANYNSILSRENKSLITSFISECNDKVKRLSEDENY ILTQKYISSLDEMCEEINKKLLYCHDSKVLKNVLDSTLQKQTEMSKYIVLLEGVPYRIEPRDIAADITNERINGAIELLN FVAKAYPKIAKESAKLQRSRPHANCSVETLNDYLEQLKKILSGKKLLSNRRQRSSSIHFKDAWGGGDKSGRINAQKNVEI NKKMEGIYIGFTQRTIESQTENQSVVFKSSKHEMVENKLIYLASLANELSKLNDSISDENLKYSINKVVGEVLELKLKKI QKIQKMAKSSKCNFSFSNLKKDLAMLSSLAVTGIAAGVIPTFIATGIVAAIAPILAALGCAIYAFNPQLKETETSKLLDA SIKDIGATLGSELKDEKLGRFEYLRHKYAAYKYRKAAKHTFDG >Mature_442_residues TVSYVGRGESLSWVYGVDNVNIPNSDVVDSPFNDFTQFDNMDFSANYNSILSRENKSLITSFISECNDKVKRLSEDENYI LTQKYISSLDEMCEEINKKLLYCHDSKVLKNVLDSTLQKQTEMSKYIVLLEGVPYRIEPRDIAADITNERINGAIELLNF VAKAYPKIAKESAKLQRSRPHANCSVETLNDYLEQLKKILSGKKLLSNRRQRSSSIHFKDAWGGGDKSGRINAQKNVEIN KKMEGIYIGFTQRTIESQTENQSVVFKSSKHEMVENKLIYLASLANELSKLNDSISDENLKYSINKVVGEVLELKLKKIQ KIQKMAKSSKCNFSFSNLKKDLAMLSSLAVTGIAAGVIPTFIATGIVAAIAPILAALGCAIYAFNPQLKETETSKLLDAS IKDIGATLGSELKDEKLGRFEYLRHKYAAYKYRKAAKHTFDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49733; Mature: 49602
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSYVGRGESLSWVYGVDNVNIPNSDVVDSPFNDFTQFDNMDFSANYNSILSRENKSLI CEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHCHHHHH TSFISECNDKVKRLSEDENYILTQKYISSLDEMCEEINKKLLYCHDSKVLKNVLDSTLQK HHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHH QTEMSKYIVLLEGVPYRIEPRDIAADITNERINGAIELLNFVAKAYPKIAKESAKLQRSR HHHHHHEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PHANCSVETLNDYLEQLKKILSGKKLLSNRRQRSSSIHFKDAWGGGDKSGRINAQKNVEI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEE NKKMEGIYIGFTQRTIESQTENQSVVFKSSKHEMVENKLIYLASLANELSKLNDSISDEN CCCCCEEEEEEHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LKYSINKVVGEVLELKLKKIQKIQKMAKSSKCNFSFSNLKKDLAMLSSLAVTGIAAGVIP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH TFIATGIVAAIAPILAALGCAIYAFNPQLKETETSKLLDASIKDIGATLGSELKDEKLGR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEYLRHKYAAYKYRKAAKHTFDG HHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TVSYVGRGESLSWVYGVDNVNIPNSDVVDSPFNDFTQFDNMDFSANYNSILSRENKSLI EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHCHHHHH TSFISECNDKVKRLSEDENYILTQKYISSLDEMCEEINKKLLYCHDSKVLKNVLDSTLQK HHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHH QTEMSKYIVLLEGVPYRIEPRDIAADITNERINGAIELLNFVAKAYPKIAKESAKLQRSR HHHHHHEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PHANCSVETLNDYLEQLKKILSGKKLLSNRRQRSSSIHFKDAWGGGDKSGRINAQKNVEI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEE NKKMEGIYIGFTQRTIESQTENQSVVFKSSKHEMVENKLIYLASLANELSKLNDSISDEN CCCCCEEEEEEHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LKYSINKVVGEVLELKLKKIQKIQKMAKSSKCNFSFSNLKKDLAMLSSLAVTGIAAGVIP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH TFIATGIVAAIAPILAALGCAIYAFNPQLKETETSKLLDASIKDIGATLGSELKDEKLGR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEYLRHKYAAYKYRKAAKHTFDG HHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA