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The map label for this gene is ygbI [C]

Identifier: 170025048

GI number: 170025048

Start: 3110041

End: 3110853

Strand: Reverse

Name: ygbI [C]

Synonym: YPK_2824

Alternate gene names: 170025048

Gene position: 3110853-3110041 (Counterclockwise)

Preceding gene: 170025049

Following gene: 170025047

Centisome position: 66.34

GC content: 48.34

Gene sequence:

>813_bases
ATGATGATCCCTGAACAGCGTCGTGACTTTATCTACCGCTACGTGCATGAGCAGAATGTCGCATCCTTCATGGATCTGGC
CGAGTTGATGAACGTGTCACACATGACGGTGCGCAGGGATATCCAGATACTGGAAGCCGAGGGGAAAGTGGTGGCAATCA
ACGGCGGTGTGAAGCTGAACAATCTGCTCAAGCTTGAGTTGGCGTACAGTGAAAAAGCGTCGCTGAATCATGAGTTGAAG
CAGAATATCGGTGTGCTGGCGGCCATGTTGATTGAACCTGGGCAGACACTGTATCTTGATGCTGGTACCACGCTTTTCGA
AGTTGCCAAAGCGGTCGCGGCCAGTAACTGTTTTAACCTGACCGTGGTGACCAATGATTTCACTATCAGTGGTTATCTGA
TGGACATGCCGCATATTAGCCTTTACCACACGGGAGGGTTAGTTGATCGCCGTAATCGTTCCTGTTTGGGAAATAGCGCC
GCCAATTTTCTTAACACTATCAATATTGATGTGGCATTCCTCAGTAGCAGTTCTTGGGATATTGCGCGAGGCATGTCAAC
GCCCAGTGAAGGTAAAGCCATGGTGAAGGCGGCTGTCATGCGCGCATCACGGCGTAATATTTTGGTCTCGGACAGCAGTA
AATTTGGTAAATATGGCATGTTCCCTATCTGTAATTTACAGGCGCTGACTGACATTATTTCAGATGGCAATCTGCCACTT
GTCGCACAGAAACAGATCAAAGAGTCCGGCGTTAAATTACATCTGGTCAACAAAGAGGTAAGAGCCCCATGCTCAAATTC
GCAGCCAATCTAA

Upstream 100 bases:

>100_bases
CACGGCTCTATTTTCTGATAAAGCCTTATGATTACAGTCAATTAACAACCTCATCCATTGATGAGTTGGCTCAATCGTAC
CGCAACAAAATAGGATAATG

Downstream 100 bases:

>100_bases
CGTGGTTATTTACCGAGGTGCCATTTTTACAGCGCTTTGCTTTGGCCGCTAAGGCTGGGTTCCCGGCAGTAGAGTGCCTT
TTCCCCTATCAGGAACAGAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHELK
QNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSA
ANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPL
VAQKQIKESGVKLHLVNKEVRAPCSNSQPI

Sequences:

>Translated_270_residues
MMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHELK
QNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSA
ANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPL
VAQKQIKESGVKLHLVNKEVRAPCSNSQPI
>Mature_270_residues
MMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHELK
QNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSA
ANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPL
VAQKQIKESGVKLHLVNKEVRAPCSNSQPI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=258, Percent_Identity=42.6356589147287, Blast_Score=210, Evalue=6e-56,
Organism=Escherichia coli, GI1789519, Length=255, Percent_Identity=29.8039215686275, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=28.8537549407115, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790753, Length=257, Percent_Identity=28.4046692607004, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789829, Length=254, Percent_Identity=26.3779527559055, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082344, Length=247, Percent_Identity=25.1012145748988, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787063, Length=211, Percent_Identity=29.3838862559242, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787540, Length=258, Percent_Identity=23.2558139534884, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788069, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789170, Length=220, Percent_Identity=26.8181818181818, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29712; Mature: 29712

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCEEEEECCCCEEEEECCEEEC
NLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNL
CEEEEEEECCCCHHCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEEE
TVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSAANFLNTINIDVAFLSSSSWD
EEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCCH
IARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPL
HHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEECCHHHHHHHHCCCCCCE
VAQKQIKESGVKLHLVNKEVRAPCSNSQPI
EEHHHHHHCCCEEEEECHHHCCCCCCCCCC
>Mature Secondary Structure
MMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCEEEEECCCCEEEEECCEEEC
NLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNL
CEEEEEEECCCCHHCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEEE
TVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSAANFLNTINIDVAFLSSSSWD
EEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCCH
IARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPL
HHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEECCHHHHHHHHCCCCCCE
VAQKQIKESGVKLHLVNKEVRAPCSNSQPI
EEHHHHHHCCCEEEEECHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]