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The map label for this gene is yebA [H]

Identifier: 170024373

GI number: 170024373

Start: 2370154

End: 2371470

Strand: Reverse

Name: yebA [H]

Synonym: YPK_2139

Alternate gene names: 170024373

Gene position: 2371470-2370154 (Counterclockwise)

Preceding gene: 170024374

Following gene: 170024372

Centisome position: 50.57

GC content: 48.75

Gene sequence:

>1317_bases
GTGCAGCAGATAGTCAGAACTATCACTTTAGCATATAACAATCTTCCTCGACCCCATCGCATCATGTTGGGGTCGTTGAC
TGTAATGACACTGGCCGTCGCTGTTTGGCGGCCTTTTATCTATCACCCAGAGCATGAACCTGTTGCCAAGAGCGTGGTGC
TAGATACCAGTCAATCCCGCATTTTATTGCCAGAAGCCAGTGAACCTCTCGATCAGCCAACGCCTGACGATGCAATCCCA
CAAGATGAATTAGACACCAAAGATGCCAATGACACTGGTGTCCATGAGTATGTTGTGTCAACGGGTGATACGTTGAGCAG
CATTCTTACCCAGTATGGGATTGATATCTCTGATGTTTCTTTATTAGCGAACCAAAACCGTGACTTACGTAATCTGAAGA
TCGGGCAGCAAATCTCCTGGACAGTGAATGACACCGGTGATTTACAAAGCCTGACTTGGGAAGTGTCGCGTCGCGAAACT
CGGACGTATAACCGTGTTGGGAACAATTTCAAAGAGACTAAAGAGCTGCAGAAAGGCGAGTGGAAGAACAGTGTTCTGAC
GGGCCGTCTTGATGGTAGTTTTGTCGGCAGTGCGAAGAAAGCAGGGCTGACAGCCGCTGAAATTCGTGCCGTGACCAAGG
CACTACAGTGGCAATTAGATTTCAGTAAGCTGCGTAAAGGCGATCAGTTTGCGGTCTTAATGTCACGGGAAATGCTGGAT
GGTCGCAGTGAGCAAAGCCAGCTCGTTGGGGTACGCATGCGGTCTGGAGGTAAAGATTATTATGCTATCCGGGCTGAAGA
TGGCAAATTCTATGATCGGCAGGGCTCTGGCCTTGCACGTGGTTTCCTACGTTTCCCTACACTGAAACAATTCCGTGTCT
CATCCAATTTTAACCCTCGTCGGTTAAATCCGGTGACTGGGCGTATTGCGCCGCATAAAGGCGTGGATTTCGCGATGCCT
GTCGGGACACCGGTATTAGCCGTGGGCGATGGCGAAGTCTTAATCTCAAAATTCAGTGGTGCTGCCGGTAACTATGTGGT
TATCCGCCATGGTCGCCAATACACCACGCATTACATGCATTTGAAAAAATTGCTGGTTAAACCCGGGCAGAAAGTAAAAC
GTGGTGACCGTATCGCGTTGTCGGGTAATACCGGCCGTTCGACTGGGCCACATCTGCATTATGAATTTTGGATGAACCAG
CAAGCGGTTAATCCACTGACAGCTAAATTGCCACGTTCAGAAGGGTTGAGTGGTAAAGATCGCAGTGAGTATTTGGCCAT
TGTTAAGCAAGTTATTCCGCAGTTACAACTGGATTAG

Upstream 100 bases:

>100_bases
GCGGTATAGTATTGGACAAGGACAGCTATGTGAACTTTTTGTCTCAGTTGTCGAACCAATATGTGAGCTGCCTGAAGTAA
GATTAAAAGGATACTCATAA

Downstream 100 bases:

>100_bases
CAGTGATACCGTCAGGTTAGCCTGTCGGTGTGTTTATCCCTAAGCTGCCAGTGAGTTGAGCACTGGCAGTTTAGTTTCAG
TCTGTCAGCCCATCGTAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MQQIVRTITLAYNNLPRPHRIMLGSLTVMTLAVAVWRPFIYHPEHEPVAKSVVLDTSQSRILLPEASEPLDQPTPDDAIP
QDELDTKDANDTGVHEYVVSTGDTLSSILTQYGIDISDVSLLANQNRDLRNLKIGQQISWTVNDTGDLQSLTWEVSRRET
RTYNRVGNNFKETKELQKGEWKNSVLTGRLDGSFVGSAKKAGLTAAEIRAVTKALQWQLDFSKLRKGDQFAVLMSREMLD
GRSEQSQLVGVRMRSGGKDYYAIRAEDGKFYDRQGSGLARGFLRFPTLKQFRVSSNFNPRRLNPVTGRIAPHKGVDFAMP
VGTPVLAVGDGEVLISKFSGAAGNYVVIRHGRQYTTHYMHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEFWMNQ
QAVNPLTAKLPRSEGLSGKDRSEYLAIVKQVIPQLQLD

Sequences:

>Translated_438_residues
MQQIVRTITLAYNNLPRPHRIMLGSLTVMTLAVAVWRPFIYHPEHEPVAKSVVLDTSQSRILLPEASEPLDQPTPDDAIP
QDELDTKDANDTGVHEYVVSTGDTLSSILTQYGIDISDVSLLANQNRDLRNLKIGQQISWTVNDTGDLQSLTWEVSRRET
RTYNRVGNNFKETKELQKGEWKNSVLTGRLDGSFVGSAKKAGLTAAEIRAVTKALQWQLDFSKLRKGDQFAVLMSREMLD
GRSEQSQLVGVRMRSGGKDYYAIRAEDGKFYDRQGSGLARGFLRFPTLKQFRVSSNFNPRRLNPVTGRIAPHKGVDFAMP
VGTPVLAVGDGEVLISKFSGAAGNYVVIRHGRQYTTHYMHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEFWMNQ
QAVNPLTAKLPRSEGLSGKDRSEYLAIVKQVIPQLQLD
>Mature_438_residues
MQQIVRTITLAYNNLPRPHRIMLGSLTVMTLAVAVWRPFIYHPEHEPVAKSVVLDTSQSRILLPEASEPLDQPTPDDAIP
QDELDTKDANDTGVHEYVVSTGDTLSSILTQYGIDISDVSLLANQNRDLRNLKIGQQISWTVNDTGDLQSLTWEVSRRET
RTYNRVGNNFKETKELQKGEWKNSVLTGRLDGSFVGSAKKAGLTAAEIRAVTKALQWQLDFSKLRKGDQFAVLMSREMLD
GRSEQSQLVGVRMRSGGKDYYAIRAEDGKFYDRQGSGLARGFLRFPTLKQFRVSSNFNPRRLNPVTGRIAPHKGVDFAMP
VGTPVLAVGDGEVLISKFSGAAGNYVVIRHGRQYTTHYMHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEFWMNQ
QAVNPLTAKLPRSEGLSGKDRSEYLAIVKQVIPQLQLD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=440, Percent_Identity=72.7272727272727, Blast_Score=689, Evalue=0.0,
Organism=Escherichia coli, GI87082174, Length=114, Percent_Identity=35.9649122807018, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=37.3737373737374, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48939; Mature: 48939

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIVRTITLAYNNLPRPHRIMLGSLTVMTLAVAVWRPFIYHPEHEPVAKSVVLDTSQSR
CHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHEECCCCCCCHHHEEEECCCCE
ILLPEASEPLDQPTPDDAIPQDELDTKDANDTGVHEYVVSTGDTLSSILTQYGIDISDVS
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHHHHHHHHHCCCHHHHH
LLANQNRDLRNLKIGQQISWTVNDTGDLQSLTWEVSRRETRTYNRVGNNFKETKELQKGE
HHHCCCCCHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
WKNSVLTGRLDGSFVGSAKKAGLTAAEIRAVTKALQWQLDFSKLRKGDQFAVLMSREMLD
CCCCEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHEECHHHCCCCCCEEEEEEHHHHC
GRSEQSQLVGVRMRSGGKDYYAIRAEDGKFYDRQGSGLARGFLRFPTLKQFRVSSNFNPR
CCCCCHHEEEEEECCCCCEEEEEEECCCCEECCCCCCHHHHHHHCCCHHHEEECCCCCCC
RLNPVTGRIAPHKGVDFAMPVGTPVLAVGDGEVLISKFSGAAGNYVVIRHGRQYTTHYMH
CCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHH
LKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEFWMNQQAVNPLTAKLPRSEGLSGKD
HHHHHHCCCHHHCCCCEEEEECCCCCCCCCEEEEEEECCCHHCCCHHHCCCCCCCCCCCC
RSEYLAIVKQVIPQLQLD
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQQIVRTITLAYNNLPRPHRIMLGSLTVMTLAVAVWRPFIYHPEHEPVAKSVVLDTSQSR
CHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHEECCCCCCCHHHEEEECCCCE
ILLPEASEPLDQPTPDDAIPQDELDTKDANDTGVHEYVVSTGDTLSSILTQYGIDISDVS
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHHHHHHHHHCCCHHHHH
LLANQNRDLRNLKIGQQISWTVNDTGDLQSLTWEVSRRETRTYNRVGNNFKETKELQKGE
HHHCCCCCHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
WKNSVLTGRLDGSFVGSAKKAGLTAAEIRAVTKALQWQLDFSKLRKGDQFAVLMSREMLD
CCCCEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHEECHHHCCCCCCEEEEEEHHHHC
GRSEQSQLVGVRMRSGGKDYYAIRAEDGKFYDRQGSGLARGFLRFPTLKQFRVSSNFNPR
CCCCCHHEEEEEECCCCCEEEEEEECCCCEECCCCCCHHHHHHHCCCHHHEEECCCCCCC
RLNPVTGRIAPHKGVDFAMPVGTPVLAVGDGEVLISKFSGAAGNYVVIRHGRQYTTHYMH
CCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHHH
LKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEFWMNQQAVNPLTAKLPRSEGLSGKD
HHHHHHCCCHHHCCCCEEEEECCCCCCCCCEEEEEEECCCHHCCCHHHCCCCCCCCCCCC
RSEYLAIVKQVIPQLQLD
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]