Click here to switch to the map view.

The map label for this gene is selD [H]

Identifier: 170024323

GI number: 170024323

Start: 2318140

End: 2319186

Strand: Reverse

Name: selD [H]

Synonym: YPK_2089

Alternate gene names: 170024323

Gene position: 2319186-2318140 (Counterclockwise)

Preceding gene: 170024324

Following gene: 170024322

Centisome position: 49.46

GC content: 48.62

Gene sequence:

>1047_bases
ATGGCATCGCCAGCGATACGTCTTACTCAATACAGCCACGGAGCGGGCTGTGGTTGCAAAATTTCACCAAAAGTTTTGGA
TAAAATTTTGCATACTGAGCAACAAAAGTTTTTTGATCCCCGGTTGCTGGTGGGCAATGAAACGCGTGATGATGCAGCGG
TTTATGATATTGGTAACGGTGTTGGCATTATCAGCACGACTGATTTTTTTATGCCGATCGTTGATGATCCTTTTGATTTT
GGGCGTATTGCCGCCACAAACGCGATCAGCGATGTATATGCTATGGGCGGTAAACCCATAATGGCTATTGCTATTTTGGG
GTGGCCCATTGACAAACTGGCACCCGAAATCGCACAGCAAGTGATCGAGGGTGGGCGATATGTTTGCCAGCAAGCGGGGA
TTTCTTTGGCAGGCGGGCACTCTATTGATGCCCCTGAACCCATTTTTGGTTTGGCTGTTACCGGAATTGTCAGCACTGAA
CAGGTTAAGAAAAACAGTGCTGCAAAGCCAGGATGCAAACTGTTTTTGACCAAGCCATTGGGCATTGGCATCTTAACGAC
AGCCGAAAAGAAAAGTAAATTACGGCCAGAACATCGGGGATTGGCAACGGAAACCATGTGTCAGTTGAATAAGCCCGGCG
CTGATTTTGCGCATATTCCCGGTGTTACCGCCATGACCGATGTCACGGGGTTTGGTCTGTTGGGGCATTTGAGTGAAATT
TGTCAGGGTTCTGGTGTCCAGGCCATTCTGCATTACTCTGCGATCCCACGTTTGCCTGCCGTTGAAGACTATATTGCTGA
AGGTTGTGTTCCAGGGGGGACTGGGCGTAATTTCGACAGTTATGGTCACCTGATCGGTAATATGTCTGATTTACAAAGAC
AATTACTTTGTGATCCTCAAACCTCTGGCGGGTTACTGTTGGCGGTCTTACCTGATGCTGAAGCCGATGTACAGGCCATT
GCCGCTCAGCACGGAATGACCCTCAGCCCAATTGGTGAATTAACCTCGGCGGATAGTCGCCGGGCGCTGATTGAGATTGT
AGTGTGA

Upstream 100 bases:

>100_bases
CGTCTTAAGCGCTACCATAGGCAATCTGGGGATTATTTTATTGAATCAATCGACGACTTACTAAACTGCTTATCACCGAA
TGACCTAACGGGAGAGTTCT

Downstream 100 bases:

>100_bases
TGGATTGTAGTGTGATGGATTGTAGTGTGATGGATTGTAGCGTGATGTTTTCTTTGACGTATTTATGCGGTGAATGATGC
GACTGTTTATTGCCGAAAAA

Product: selenophosphate synthetase

Products: NA

Alternate protein names: Selenium donor protein; Selenophosphate synthase [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MASPAIRLTQYSHGAGCGCKISPKVLDKILHTEQQKFFDPRLLVGNETRDDAAVYDIGNGVGIISTTDFFMPIVDDPFDF
GRIAATNAISDVYAMGGKPIMAIAILGWPIDKLAPEIAQQVIEGGRYVCQQAGISLAGGHSIDAPEPIFGLAVTGIVSTE
QVKKNSAAKPGCKLFLTKPLGIGILTTAEKKSKLRPEHRGLATETMCQLNKPGADFAHIPGVTAMTDVTGFGLLGHLSEI
CQGSGVQAILHYSAIPRLPAVEDYIAEGCVPGGTGRNFDSYGHLIGNMSDLQRQLLCDPQTSGGLLLAVLPDAEADVQAI
AAQHGMTLSPIGELTSADSRRALIEIVV

Sequences:

>Translated_348_residues
MASPAIRLTQYSHGAGCGCKISPKVLDKILHTEQQKFFDPRLLVGNETRDDAAVYDIGNGVGIISTTDFFMPIVDDPFDF
GRIAATNAISDVYAMGGKPIMAIAILGWPIDKLAPEIAQQVIEGGRYVCQQAGISLAGGHSIDAPEPIFGLAVTGIVSTE
QVKKNSAAKPGCKLFLTKPLGIGILTTAEKKSKLRPEHRGLATETMCQLNKPGADFAHIPGVTAMTDVTGFGLLGHLSEI
CQGSGVQAILHYSAIPRLPAVEDYIAEGCVPGGTGRNFDSYGHLIGNMSDLQRQLLCDPQTSGGLLLAVLPDAEADVQAI
AAQHGMTLSPIGELTSADSRRALIEIVV
>Mature_347_residues
ASPAIRLTQYSHGAGCGCKISPKVLDKILHTEQQKFFDPRLLVGNETRDDAAVYDIGNGVGIISTTDFFMPIVDDPFDFG
RIAATNAISDVYAMGGKPIMAIAILGWPIDKLAPEIAQQVIEGGRYVCQQAGISLAGGHSIDAPEPIFGLAVTGIVSTEQ
VKKNSAAKPGCKLFLTKPLGIGILTTAEKKSKLRPEHRGLATETMCQLNKPGADFAHIPGVTAMTDVTGFGLLGHLSEIC
QGSGVQAILHYSAIPRLPAVEDYIAEGCVPGGTGRNFDSYGHLIGNMSDLQRQLLCDPQTSGGLLLAVLPDAEADVQAIA
AQHGMTLSPIGELTSADSRRALIEIVV

Specific function: Synthesizes selenophosphate from selenide and ATP [H]

COG id: COG0709

COG function: function code E; Selenophosphate synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the selenophosphate synthase 1 family. Class I subfamily [H]

Homologues:

Organism=Homo sapiens, GI24797148, Length=344, Percent_Identity=29.9418604651163, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI15011844, Length=361, Percent_Identity=27.9778393351801, Blast_Score=102, Evalue=4e-22,
Organism=Escherichia coli, GI1788062, Length=346, Percent_Identity=76.0115606936416, Blast_Score=551, Evalue=1e-158,
Organism=Caenorhabditis elegans, GI17543426, Length=367, Percent_Identity=29.1553133514986, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24653602, Length=380, Percent_Identity=28.6842105263158, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24653604, Length=380, Percent_Identity=28.6842105263158, Blast_Score=108, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000728
- InterPro:   IPR010918
- InterPro:   IPR016188
- InterPro:   IPR004536
- InterPro:   IPR023061 [H]

Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]

EC number: =2.7.9.3 [H]

Molecular weight: Translated: 36686; Mature: 36554

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPAIRLTQYSHGAGCGCKISPKVLDKILHTEQQKFFDPRLLVGNETRDDAAVYDIGNG
CCCCCEEEEEECCCCCCCCEECHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEECCCC
VGIISTTDFFMPIVDDPFDFGRIAATNAISDVYAMGGKPIMAIAILGWPIDKLAPEIAQQ
EEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
VIEGGRYVCQQAGISLAGGHSIDAPEPIFGLAVTGIVSTEQVKKNSAAKPGCKLFLTKPL
HHHCCHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GIGILTTAEKKSKLRPEHRGLATETMCQLNKPGADFAHIPGVTAMTDVTGFGLLGHLSEI
CCEEEEECHHHHHCCHHHCCCHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHH
CQGSGVQAILHYSAIPRLPAVEDYIAEGCVPGGTGRNFDSYGHLIGNMSDLQRQLLCDPQ
HCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCC
TSGGLLLAVLPDAEADVQAIAAQHGMTLSPIGELTSADSRRALIEIVV
CCCCEEEEECCCCCHHHHHHHHHCCCEECCCHHHHCCCCCCEEEEEEC
>Mature Secondary Structure 
ASPAIRLTQYSHGAGCGCKISPKVLDKILHTEQQKFFDPRLLVGNETRDDAAVYDIGNG
CCCCEEEEEECCCCCCCCEECHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEECCCC
VGIISTTDFFMPIVDDPFDFGRIAATNAISDVYAMGGKPIMAIAILGWPIDKLAPEIAQQ
EEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
VIEGGRYVCQQAGISLAGGHSIDAPEPIFGLAVTGIVSTEQVKKNSAAKPGCKLFLTKPL
HHHCCHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GIGILTTAEKKSKLRPEHRGLATETMCQLNKPGADFAHIPGVTAMTDVTGFGLLGHLSEI
CCEEEEECHHHHHCCHHHCCCHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHH
CQGSGVQAILHYSAIPRLPAVEDYIAEGCVPGGTGRNFDSYGHLIGNMSDLQRQLLCDPQ
HCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCC
TSGGLLLAVLPDAEADVQAIAAQHGMTLSPIGELTSADSRRALIEIVV
CCCCEEEEECCCCCHHHHHHHHHCCCEECCCHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]