Definition Yersinia pseudotuberculosis YPIII chromosome, complete genome.
Accession NC_010465
Length 4,689,441

Click here to switch to the map view.

The map label for this gene is 170023850

Identifier: 170023850

GI number: 170023850

Start: 1778517

End: 1779179

Strand: Direct

Name: 170023850

Synonym: YPK_1609

Alternate gene names: NA

Gene position: 1778517-1779179 (Clockwise)

Preceding gene: 170023849

Following gene: 170023851

Centisome position: 37.93

GC content: 33.48

Gene sequence:

>663_bases
ATGCCAGCATATATTAGCGCAGATTTTTCACCAGCCTATTCATATTCAAATATCAAAGATGTAAAAGACACTCCTTGTAA
AACTCTGAGTGATTCTGATATTAATGGATTTTTGTTAACCCCAAAGCGAGGAAAGAGATTATATGAAATAAAATTAATTA
TACAAGATGTTCACCAAAAAGGCGTTAATACGACGTCAGTCAAAGAAAGTCTTAAGGAGTTAAAAAGTGAATTTAGACAG
TTAATTGAAATTTCAGCGGAACTCAGGGAGAAGATCTATGAGGTTATGATTCATAAGAAAACAGGAGCGGAAATGCTAGA
GTTCCGGCCTGGGTATGATAAATCAGATAGAGATAATTATATAAATGGCCTAATTTATTTGTATAAAATACACCAGTGCG
TTTCTGATTCAATAGAAGACGCACCCAAAAATTATAAAGAATTATTAAAGAAAATTATTGATACAAAAGATAAAAGCCCT
GTGCATGGAGATATAAAATCATTAAGTGAGGGCGATGAAGTGCCTACGCTGAAATATAATAATGCTAAAAATTCCAAGTC
AGGTTGTTCCTGTGAAGATATAGGAGAAGGGTGTTGTAAGATTGGAGGTCCTGTTACAGGGATTATTGCATCTATATTGG
GTTGTGTCGTCTTATTTATATAA

Upstream 100 bases:

>100_bases
TTACTATTTTAAATAACCTGTATTTCAAGGGGGCATCCTGTCAGTATTGATTATTTATTTTTTAACCAATCTATTTGTTT
TATATTAACAAGGTTTATAC

Downstream 100 bases:

>100_bases
CGGACTAAATGAACAGTATAAGTAATCCTGTAAGAGGTGTAAATTACAGAAACTAAATTATCTGATTGGGTTAATGATAT
TAATTATGTGCTGGTTTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MPAYISADFSPAYSYSNIKDVKDTPCKTLSDSDINGFLLTPKRGKRLYEIKLIIQDVHQKGVNTTSVKESLKELKSEFRQ
LIEISAELREKIYEVMIHKKTGAEMLEFRPGYDKSDRDNYINGLIYLYKIHQCVSDSIEDAPKNYKELLKKIIDTKDKSP
VHGDIKSLSEGDEVPTLKYNNAKNSKSGCSCEDIGEGCCKIGGPVTGIIASILGCVVLFI

Sequences:

>Translated_220_residues
MPAYISADFSPAYSYSNIKDVKDTPCKTLSDSDINGFLLTPKRGKRLYEIKLIIQDVHQKGVNTTSVKESLKELKSEFRQ
LIEISAELREKIYEVMIHKKTGAEMLEFRPGYDKSDRDNYINGLIYLYKIHQCVSDSIEDAPKNYKELLKKIIDTKDKSP
VHGDIKSLSEGDEVPTLKYNNAKNSKSGCSCEDIGEGCCKIGGPVTGIIASILGCVVLFI
>Mature_219_residues
PAYISADFSPAYSYSNIKDVKDTPCKTLSDSDINGFLLTPKRGKRLYEIKLIIQDVHQKGVNTTSVKESLKELKSEFRQL
IEISAELREKIYEVMIHKKTGAEMLEFRPGYDKSDRDNYINGLIYLYKIHQCVSDSIEDAPKNYKELLKKIIDTKDKSPV
HGDIKSLSEGDEVPTLKYNNAKNSKSGCSCEDIGEGCCKIGGPVTGIIASILGCVVLFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24610; Mature: 24478

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAYISADFSPAYSYSNIKDVKDTPCKTLSDSDINGFLLTPKRGKRLYEIKLIIQDVHQK
CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHC
GVNTTSVKESLKELKSEFRQLIEISAELREKIYEVMIHKKTGAEMLEFRPGYDKSDRDNY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHH
INGLIYLYKIHQCVSDSIEDAPKNYKELLKKIIDTKDKSPVHGDIKSLSEGDEVPTLKYN
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEC
NAKNSKSGCSCEDIGEGCCKIGGPVTGIIASILGCVVLFI
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
PAYISADFSPAYSYSNIKDVKDTPCKTLSDSDINGFLLTPKRGKRLYEIKLIIQDVHQK
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHC
GVNTTSVKESLKELKSEFRQLIEISAELREKIYEVMIHKKTGAEMLEFRPGYDKSDRDNY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHH
INGLIYLYKIHQCVSDSIEDAPKNYKELLKKIIDTKDKSPVHGDIKSLSEGDEVPTLKYN
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEC
NAKNSKSGCSCEDIGEGCCKIGGPVTGIIASILGCVVLFI
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA