| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is ynfE [H]
Identifier: 170023697
GI number: 170023697
Start: 1606146
End: 1608572
Strand: Reverse
Name: ynfE [H]
Synonym: YPK_1456
Alternate gene names: 170023697
Gene position: 1608572-1606146 (Counterclockwise)
Preceding gene: 170023700
Following gene: 170023696
Centisome position: 34.3
GC content: 47.55
Gene sequence:
>2427_bases ATGAATAACAATAAAACACCGCTCACCGGCTCACTGAGTCGTCGTGAATTTATTCAAACATCCGCCGTAGTGACCGGGGC TGCGGCAATTGCCGGTTCAATCACCCTCCCATTCTCCGTCCATGCTGCGGCTTCAGAACATGCCCCCACGGCGGCTGAAG AGAGCATTAAATACAGTGCTTGTCTGGTTAACTGTGGCAGCCGCTGTCCGCTAAAAGTTCATGTTAAAAATGGTGAAATA ATTAAAATTGCTAATGAAGCCATTTATGATGATTCCACCTTTGGCTTACACCAAATTCGCCCCTGCTTACGTGGCCGTTC AGTACGATGGAAAACCTATAATCCGGATCGGGTTAAATATCCGATGTTGCGAGTGGGTAAACGCGGTGAAGGTAAATTCA AGCGTATCAGTTGGGATGAAGCCACAACTATAGTTGCGGATAATCTGAAAAAAACGATTGTTCAATACGGCAACGAAGCG ATTTATTATCAATATGGCTCTGGTTCAACCGGGGCTAATTTACAAGGCCGCAATGCCTGTAAACGTATGTTGAGTTTGAT CGGCGGTTATCTTGATCAGCACGGCACTTATTCTACCGCCCAAATCAATACCGTCATGCCTTATGTCTACGGCAACTTAG ATGAAACACTACTGGACGAAATTAAAAATTCTGATCTGGTGGTGATGTTTGGTCACAATCTGGCAGAAACACGGATGTCA GGCGGTGGGCAATATATTGAAACGGTTCAGGCGTTGGGTCAAAGCCGAGCCAAAGTCATTATTATTGACCCACGCATGAC CGACAGTGTGACCACCCTTAACGCCGAATGGATCCCGATATTCCCAGGGACCGATGCGGCACTGGTCGCCGCGCTGGGGC ATGTTTTAATTAAAGAGAATCTGACTGACGAACGTTTCCTGCAACAATATTGTGTCGGTTGGGATGCCACCACATTGCCC GCATCGGCCCCAGCTAACGGATCGTATAAAGATTATATTTTAGGTCTGGGTGCTGACGAAACCGAAAAAACACCAGAATG GGCCAGTGAGATAACCGGTATTTCACCAACACGTATTATTCAATTAGCCAGAGAACTGGGTAATGCCCGCGCAGCCTGGA TTTCACAGGGTTGGGGAATTCAACGCACAGCGAACGGGGAGCAAGCGTCCCGCTCGATTATGATGCTCCCATTAATGACC AGTAATATTGGCCGTGCCGGAACCAATACCGGTGCCTGGGGTGGCAACGTAAAATACCCGGTTCCCGGATTCAGCATTCC CAATCCAGTCAAAACGGCCATTCCTTGCTTTATGTGGACCGATGCTATTTTCCGCGGCACTGAAATGACCGCTAAAAATG CCCATGTGAAAAATAAAGAAAAACTGGATACCAATATTAAGTTTCTCTGGAACTACGCCAGTAATGTTATAGCAAATCAG CACTCTGATCTGAATAAAACCAATACTATTTTGCAAGATGAGTCATTGTGCGAATTTATTTTGGTCTGGGAAAACCATAT GACCAATTCGGCGAAATACGCGGATTTATTATTGCCAGACGTCACGTCGGTTGAATCAAATGACCTGATTGATAACTCCT ATGCCAGTGGCGCTTATCACTATGTCACCCGGATGCAAAATACCATTGAGCCGCTGTGGGAATGCCGCCCCTCATACGAT GTATTAGCCGAGATTGCCACCAAATTAGGCGTGGGGGATGCCTTTACTGAAGGACATACCCAGCAAGAATGGATTGAAAT CAGCTATAACAAAATGCGTGATAAAAATCCGGCGCTGCCGCCTTTCAGTGACACCCATAACAAAGGCATTATTGACCGTA TTTTTGCTGACAGTAGCCAATATATCGCGTTAAAAGATTTCCGCGATGATCCAGTAAATAACCCGTTAAAAACCCCATCA GGCAAGATTGAGATCTATTCCGAAGCACTGGCAACACTCGCACACGAGTGGCAGTTGGCGCCGGGTGATCGCATTACCGC AGTGGCTGAATATTGTCCGACCCCTGAGGGCGTCAGTGATCAGGAGACCCTGAAGAGCTACCCTCTGCAAATGACCGGTT TCCATGTTAAAGGCCATACCCACTCAACCTATTACAATGTCGCGATGCTGCGCGAAGCGGTGCCTCATCAATTCTGGATG AACCCGATTGATGCACAGGCGCGTGGCATACAGCAAGGCGAGCGGGTCGAAATATTTAATAGCCGTGGCCGTATCCATAT TGCGGTCAAAATTACTGAGCGGGTATTACCGGGGGTTATTGCTGTGCCACAAGGGGCATGGCGTAATCTCAACAAGGACG GTATCGACGTGGGTGGCTGTATCAATACGTTGACGACACAACGCCCTTCGCCATTGGCGAAAGGTAATCCTCAACACACC AACCTCGTTGAAGTAAAACGTGCATAA
Upstream 100 bases:
>100_bases CCAGTTCTATACCCAAGTCATTGGCATTGTTGCTAACACCACGACAACGTCAAGTAAAAAAGGGATGTCCTGCTCTTTTA TTTCCGCAAGGATAATGTTG
Downstream 100 bases:
>100_bases GGAGCTGAATAATGAAGCAATATGGTTTTTTTGTTGACTCCACCAAGTGCACGGGGTGTAAAACCTGCCAAGTCAGTTGT AAGGACGAAAAGAATCTGGA
Product: anaerobic dimethyl sulfoxide reductase subunit A
Products: NA
Alternate protein names: DMSO reductase [H]
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSITLPFSVHAAASEHAPTAAEESIKYSACLVNCGSRCPLKVHVKNGEI IKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKYPMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEA IYYQYGSGSTGANLQGRNACKRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKENLTDERFLQQYCVGWDATTLP ASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRIIQLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMT SNIGRAGTNTGAWGGNVKYPVPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYHYVTRMQNTIEPLWECRPSYD VLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALPPFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPS GKIEIYSEALATLAHEWQLAPGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGCINTLTTQRPSPLAKGNPQHT NLVEVKRA
Sequences:
>Translated_808_residues MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSITLPFSVHAAASEHAPTAAEESIKYSACLVNCGSRCPLKVHVKNGEI IKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKYPMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEA IYYQYGSGSTGANLQGRNACKRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKENLTDERFLQQYCVGWDATTLP ASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRIIQLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMT SNIGRAGTNTGAWGGNVKYPVPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYHYVTRMQNTIEPLWECRPSYD VLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALPPFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPS GKIEIYSEALATLAHEWQLAPGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGCINTLTTQRPSPLAKGNPQHT NLVEVKRA >Mature_808_residues MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSITLPFSVHAAASEHAPTAAEESIKYSACLVNCGSRCPLKVHVKNGEI IKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKYPMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEA IYYQYGSGSTGANLQGRNACKRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKENLTDERFLQQYCVGWDATTLP ASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRIIQLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMT SNIGRAGTNTGAWGGNVKYPVPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYHYVTRMQNTIEPLWECRPSYD VLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALPPFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPS GKIEIYSEALATLAHEWQLAPGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGCINTLTTQRPSPLAKGNPQHT NLVEVKRA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787870, Length=805, Percent_Identity=52.5465838509317, Blast_Score=830, Evalue=0.0, Organism=Escherichia coli, GI87081797, Length=810, Percent_Identity=51.2345679012346, Blast_Score=809, Evalue=0.0, Organism=Escherichia coli, GI171474008, Length=806, Percent_Identity=49.8759305210918, Blast_Score=782, Evalue=0.0, Organism=Escherichia coli, GI145693196, Length=758, Percent_Identity=30.2110817941952, Blast_Score=274, Evalue=2e-74, Organism=Escherichia coli, GI87081994, Length=864, Percent_Identity=28.8194444444444, Blast_Score=271, Evalue=1e-73, Organism=Escherichia coli, GI1787231, Length=757, Percent_Identity=27.0805812417437, Blast_Score=249, Evalue=5e-67, Organism=Escherichia coli, GI3868721, Length=780, Percent_Identity=24.7435897435897, Blast_Score=145, Evalue=1e-35, Organism=Escherichia coli, GI1788534, Length=425, Percent_Identity=24, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011888 - InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 89247; Mature: 89247
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSITLPFSVHAAASEHAPTAAEESIKYSA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCEEEECCCCCCCCCHHHHHCEEEE CLVNCGSRCPLKVHVKNGEIIKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKY EEEECCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEC PMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEAIYYQYGSGSTGANLQGRNAC HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH KRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS HHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCHHHHHHHCCCCEEEEECCCHHHHHHC GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKEN CCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCC LTDERFLQQYCVGWDATTLPASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRII CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH QLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMTSNIGRAGTNTGAWGGNVKYP HHHHHHCCCCEEHHHCCCCCEECCCCHHHCCCEEEEEEHHCCCCCCCCCCCCCCCCCCCC VPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEEHHHHHHHHCC HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYH CCCCCHHHCEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH YVTRMQNTIEPLWECRPSYDVLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALP HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHEEEEHHHCCCCCCCCC PFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPSGKIEIYSEALATLAHEWQLA CCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCC PGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM CCCCCHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCHHHCC NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGC CCCCHHHHCCCCCCEEEEECCCCEEEEEEEEECHHCCCEEECCCHHHHCCCCCCCCCCHH INTLTTQRPSPLAKGNPQHTNLVEVKRA HHHHHCCCCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure MNNNKTPLTGSLSRREFIQTSAVVTGAAAIAGSITLPFSVHAAASEHAPTAAEESIKYSA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCEEEECCCCCCCCCHHHHHCEEEE CLVNCGSRCPLKVHVKNGEIIKIANEAIYDDSTFGLHQIRPCLRGRSVRWKTYNPDRVKY EEEECCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCEEC PMLRVGKRGEGKFKRISWDEATTIVADNLKKTIVQYGNEAIYYQYGSGSTGANLQGRNAC HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH KRMLSLIGGYLDQHGTYSTAQINTVMPYVYGNLDETLLDEIKNSDLVVMFGHNLAETRMS HHHHHHHHHHHHCCCCCCEEEEEEECCHHCCCCCHHHHHHHCCCCEEEEECCCHHHHHHC GGGQYIETVQALGQSRAKVIIIDPRMTDSVTTLNAEWIPIFPGTDAALVAALGHVLIKEN CCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCC LTDERFLQQYCVGWDATTLPASAPANGSYKDYILGLGADETEKTPEWASEITGISPTRII CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCHHHHH QLARELGNARAAWISQGWGIQRTANGEQASRSIMMLPLMTSNIGRAGTNTGAWGGNVKYP HHHHHHCCCCEEHHHCCCCCEECCCCHHHCCCEEEEEEHHCCCCCCCCCCCCCCCCCCCC VPGFSIPNPVKTAIPCFMWTDAIFRGTEMTAKNAHVKNKEKLDTNIKFLWNYASNVIANQ CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCEEEEHHHHHHHHCC HSDLNKTNTILQDESLCEFILVWENHMTNSAKYADLLLPDVTSVESNDLIDNSYASGAYH CCCCCHHHCEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH YVTRMQNTIEPLWECRPSYDVLAEIATKLGVGDAFTEGHTQQEWIEISYNKMRDKNPALP HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHEEEEHHHCCCCCCCCC PFSDTHNKGIIDRIFADSSQYIALKDFRDDPVNNPLKTPSGKIEIYSEALATLAHEWQLA CCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCC PGDRITAVAEYCPTPEGVSDQETLKSYPLQMTGFHVKGHTHSTYYNVAMLREAVPHQFWM CCCCCHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCHHHCC NPIDAQARGIQQGERVEIFNSRGRIHIAVKITERVLPGVIAVPQGAWRNLNKDGIDVGGC CCCCHHHHCCCCCCEEEEECCCCEEEEEEEEECHHCCCEEECCCHHHHCCCCCCCCCCHH INTLTTQRPSPLAKGNPQHTNLVEVKRA HHHHHCCCCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]