Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 170016335

GI number: 170016335

Start: 20470

End: 21654

Strand: Direct

Name: ydcR [H]

Synonym: LCK_p100028

Alternate gene names: 170016335

Gene position: 20470-21654 (Clockwise)

Preceding gene: 170016334

Following gene: 170016336

Centisome position: 52.88

GC content: 36.88

Gene sequence:

>1185_bases
ATGTCAGAGAATTACACTAATTTAAGTTTTGAACAGATGTCAGGACACGATTTAATAGCATTTCGAGAGCATTATAATTT
ATCCCGACTTCAAATGGCTTCATTTATGATGATTTCAAAGCGTACTTATGGACGTATGGAAATGAGTGAAGATAACTTGA
TGACAGTTTTAAATGCGGATCAGCGATATATTTTGAAAACCTATGTTGGTAGTCAGGGTTTGTCGCTTTGGTTGGATTAT
TTGGGTATGTCGTTTAAAATGCGCACACCGGAAATGCTAATTAAGCTATTTTTTGATAATCGCCTTGACCTCTTTGTTAA
GCGTGATAGTGGACGGTACGGCTACAATGTCGCTTATTCATTTGGTGGCTTATCCTATATTACGATTTACGGTAAACGTG
ATGGCCCTGAAAGTTTTATCGACTTTTCGGGTAGTGGTATTCGCTTAATGGAAATGTTGTTGATAGGGCAGGGGTTAGTT
TGGTCTCACTTTATCAATATTGCCCTGGCAAATGGTGGTAAGGCAACACGTATGGATTTTGCGTTTAATGATATGTCACG
TATGTTTGAAATTCCAGAATTATATCAAAAGCTCATGGCAGATGAGTATACGCAGAAATTTAAGAGTGATCCACAATATT
ATGCGGACGGTAAAAATGGTGGTTCAACGATTTATTTTGGTTCACGTTCATCAGAAGTCTTTTTTAGATTTTATGAAAAG
GATAAAGAGCAAGCCAAAAAACACTTTGTTGAGCCAGAAGCCATTCCTGTTAAAAACCGTTATGAAGTTGAGTTGAAACA
AAAACGTGCGCAAACTATGGCGGAGCATGTAGCCAACGGTCAAGATGTTGCTGGTGAGTTGTTAGCCTATTTGCGTGATT
ATTTACAATTTTATAATCAGCCCGTTGTTGGTTTAGATAAAAAGGAAATTGCTAAATTAGATCTATGGCAACCCTGGGTA
GTATTTTTAGAACAAGCCAGTATCGTTGATTTTCAAGCAGAGCCTAAAGAGGTGTCAATGGATCGTTCATTGTCTTGGTT
TATTAATCAGGTAGCACCGACTTTAAAAGGGCTGATTGAATATTATGGTCAGGAAAAAATTGATGAAATTCTTGATGATA
CGGAATTGAGTCAACGTCAAAAGAAATTGTTATCAGTTGCTGAAAAGGTTAACTTACCTTTTTAA

Upstream 100 bases:

>100_bases
GAGGGAGGTGGCGATTGGGTGATGTCATTTAAACCTGTTGATAATAACCAACGTATTGAACGATTGGAATATTGGAAAGA
CATTGCCGAACGGTTAAGGT

Downstream 100 bases:

>100_bases
AAGTTAAAAATTGGAGGACACACAGATGTCAGAACAAGGAACACAATTCAAAAAAGCACTTAGCGCTACTGCAACCGAAG
TCGCTAACTTTAAGGCATTA

Product: YdcR protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSENYTNLSFEQMSGHDLIAFREHYNLSRLQMASFMMISKRTYGRMEMSEDNLMTVLNADQRYILKTYVGSQGLSLWLDY
LGMSFKMRTPEMLIKLFFDNRLDLFVKRDSGRYGYNVAYSFGGLSYITIYGKRDGPESFIDFSGSGIRLMEMLLIGQGLV
WSHFINIALANGGKATRMDFAFNDMSRMFEIPELYQKLMADEYTQKFKSDPQYYADGKNGGSTIYFGSRSSEVFFRFYEK
DKEQAKKHFVEPEAIPVKNRYEVELKQKRAQTMAEHVANGQDVAGELLAYLRDYLQFYNQPVVGLDKKEIAKLDLWQPWV
VFLEQASIVDFQAEPKEVSMDRSLSWFINQVAPTLKGLIEYYGQEKIDEILDDTELSQRQKKLLSVAEKVNLPF

Sequences:

>Translated_394_residues
MSENYTNLSFEQMSGHDLIAFREHYNLSRLQMASFMMISKRTYGRMEMSEDNLMTVLNADQRYILKTYVGSQGLSLWLDY
LGMSFKMRTPEMLIKLFFDNRLDLFVKRDSGRYGYNVAYSFGGLSYITIYGKRDGPESFIDFSGSGIRLMEMLLIGQGLV
WSHFINIALANGGKATRMDFAFNDMSRMFEIPELYQKLMADEYTQKFKSDPQYYADGKNGGSTIYFGSRSSEVFFRFYEK
DKEQAKKHFVEPEAIPVKNRYEVELKQKRAQTMAEHVANGQDVAGELLAYLRDYLQFYNQPVVGLDKKEIAKLDLWQPWV
VFLEQASIVDFQAEPKEVSMDRSLSWFINQVAPTLKGLIEYYGQEKIDEILDDTELSQRQKKLLSVAEKVNLPF
>Mature_393_residues
SENYTNLSFEQMSGHDLIAFREHYNLSRLQMASFMMISKRTYGRMEMSEDNLMTVLNADQRYILKTYVGSQGLSLWLDYL
GMSFKMRTPEMLIKLFFDNRLDLFVKRDSGRYGYNVAYSFGGLSYITIYGKRDGPESFIDFSGSGIRLMEMLLIGQGLVW
SHFINIALANGGKATRMDFAFNDMSRMFEIPELYQKLMADEYTQKFKSDPQYYADGKNGGSTIYFGSRSSEVFFRFYEKD
KEQAKKHFVEPEAIPVKNRYEVELKQKRAQTMAEHVANGQDVAGELLAYLRDYLQFYNQPVVGLDKKEIAKLDLWQPWVV
FLEQASIVDFQAEPKEVSMDRSLSWFINQVAPTLKGLIEYYGQEKIDEILDDTELSQRQKKLLSVAEKVNLPF

Specific function: Probable DNA relaxase involved in the transfer of the integrative and conjugative element ICEBs1. Required for the transfer of ICEBs1. Probably mediates conjugation of ICEBs1 by nicking at oriT on the conjugative element and facilitates the translocation

COG id: COG2946

COG function: function code L; Putative phage replication protein RstA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the plasmid replication initiation factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003491 [H]

Pfam domain/function: PF02486 Rep_trans [H]

EC number: NA

Molecular weight: Translated: 45794; Mature: 45663

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENYTNLSFEQMSGHDLIAFREHYNLSRLQMASFMMISKRTYGRMEMSEDNLMTVLNAD
CCCCCCCCCHHHCCCCCEEEEHHHCCHHHHHHHHHHHHHHHCCCCCEECCCCEEEEECCC
QRYILKTYVGSQGLSLWLDYLGMSFKMRTPEMLIKLFFDNRLDLFVKRDSGRYGYNVAYS
CCEEHHHHHCCCHHHHHHHHHCCEEEECCHHHHHHHHHCCCEEEEEEECCCCCCEEEEEE
FGGLSYITIYGKRDGPESFIDFSGSGIRLMEMLLIGQGLVWSHFINIALANGGKATRMDF
CCCEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHEEECCCCCEEEEE
AFNDMSRMFEIPELYQKLMADEYTQKFKSDPQYYADGKNGGSTIYFGSRSSEVFFRFYEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCHHHHHHHHH
DKEQAKKHFVEPEAIPVKNRYEVELKQKRAQTMAEHVANGQDVAGELLAYLRDYLQFYNQ
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PVVGLDKKEIAKLDLWQPWVVFLEQASIVDFQAEPKEVSMDRSLSWFINQVAPTLKGLIE
CCCCCCHHHHHHCCCCCHHHHHHHHHHEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHH
YYGQEKIDEILDDTELSQRQKKLLSVAEKVNLPF
HHCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SENYTNLSFEQMSGHDLIAFREHYNLSRLQMASFMMISKRTYGRMEMSEDNLMTVLNAD
CCCCCCCCHHHCCCCCEEEEHHHCCHHHHHHHHHHHHHHHCCCCCEECCCCEEEEECCC
QRYILKTYVGSQGLSLWLDYLGMSFKMRTPEMLIKLFFDNRLDLFVKRDSGRYGYNVAYS
CCEEHHHHHCCCHHHHHHHHHCCEEEECCHHHHHHHHHCCCEEEEEEECCCCCCEEEEEE
FGGLSYITIYGKRDGPESFIDFSGSGIRLMEMLLIGQGLVWSHFINIALANGGKATRMDF
CCCEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHEEECCCCCEEEEE
AFNDMSRMFEIPELYQKLMADEYTQKFKSDPQYYADGKNGGSTIYFGSRSSEVFFRFYEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCHHHHHHHHH
DKEQAKKHFVEPEAIPVKNRYEVELKQKRAQTMAEHVANGQDVAGELLAYLRDYLQFYNQ
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PVVGLDKKEIAKLDLWQPWVVFLEQASIVDFQAEPKEVSMDRSLSWFINQVAPTLKGLIE
CCCCCCHHHHHHCCCCCHHHHHHHHHHEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHH
YYGQEKIDEILDDTELSQRQKKLLSVAEKVNLPF
HHCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]