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The map label for this gene is rnfC [H]

Identifier: 169824043

GI number: 169824043

Start: 401923

End: 403251

Strand: Direct

Name: rnfC [H]

Synonym: FMG_0346

Alternate gene names: 169824043

Gene position: 401923-403251 (Clockwise)

Preceding gene: 169824042

Following gene: 169824044

Centisome position: 22.36

GC content: 36.04

Gene sequence:

>1329_bases
ATGAGTTTAGAAAATCTGACTTTTAAGGGCGGATTTCACATGGATGATCATAAATCCTACACTCAAAATTGTCCTTTAGA
TACAAATTTTGAACCTAAAATGGTTTACATCCCATTGCATCAACACATTGGTGCGCCTTGTACACCTATAGTAAAAGTAG
GCGACGAGGTTAAAGTGGGCCAAAAAATTGGTGAATCTAAAGCGACTATTTCAGCGCCTGTTCACAGTTCAGTTAGTGGA
AAGGTTATGAAAATTGAGCAAATGGTATTGTCAAATGGTCAAAAAGGTGAAGTCGTAGTAATCGAATCAGACGGTTTAAA
CGAGTTAGGATACACTGAAACAAATGATGATTTTACACAATTATCAAAAGAAGTTATCCTAGAGAGAATAAAAGAAGCTG
GTATAGTAGGTTTGGGTGGAGCAGGATTCCCTACACATCTTAAGATGAATAAAAAACCCGATGTAAAAATCGAGCAAGTT
ATCTTAAACGGGGCAGAATGTGAACCTTATTTAACTAGTGACCAACTTAACATGGAATTATATCCTCAAAAAGCTATCGG
TGGATTGAAAATTATCATGAAATTGATGGATTGCGACAAAGGATACATAGGGGTTGAGGATAACAAACAAAAAGCTATCG
GAATTTTGAAAAATGCCGCTAAGGATGAGAAAAATATTTCGATTTGCTCTGTTAAAACAAAATACCCACAAGGGGACGAA
AGAAGACTTATCAATGCAATTACTGGTAAGAAGATTTCGAAAGCTCAAAGATCAAACGAAAGAGGAGTTCAAGGTTTGAA
TATTTCAAGTGCTATGGCGATTTACGATGCTGTAGTTCATAGTATTCCTTTGACTCATAGAATTGTGACAATGACAGGTT
CAGCTATCAAAGAACCTAAAAATATATACGTTCCAGTAGGTACTAAATTCAAAGATTTAGTAGATTATTGCGACGGATTC
AAAGAAACACCGTATAAGATTGTAGTTGGTGGACCTATGATGGGTGCTTGCCAATACAATTTGGAAGCTCCAACTGTTAA
AACAACAGGTGGAATTATTTGCATGAACGAAAAAGATGCAACTCTTGCTTCTCCAGAACCTTGTATTAAATGTGCTAAGT
GCGTGGATGTATGTCCTATCGGCTTATTACCATTGTTCTTACAATTAAAATCATTGAATGGTGATTTTGAAGGAGCAGAA
AAAATGCATTTGAATGATTGTATCGAATGTGGTACTTGCAGCTATATTTGTCCATCAAACAGACCATTAGTTGAAGCAAT
TGTACACGCAAAGACTCAATTAAAAGCACAACAAAGGAAAAGGGGATAG

Upstream 100 bases:

>100_bases
ATGGTAGACACGCTGTCTTGAGGGGGCAGTGGGAGTAATCCCGTAAGAGTTCAAGTCTCTTTCTCTGCACCATTTTTTAT
TTTATTAAAGGGGTGAAAAA

Downstream 100 bases:

>100_bases
TCTATGGAAAATAAAGAAATTATACAAAAAGAATACGACTTATCTCATTTAATCGTAGAAGCTGCTCCTCATCAAAGAAG
TGCAGTATCTATTCAAAGAA

Product: electron transport complex protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSLENLTFKGGFHMDDHKSYTQNCPLDTNFEPKMVYIPLHQHIGAPCTPIVKVGDEVKVGQKIGESKATISAPVHSSVSG
KVMKIEQMVLSNGQKGEVVVIESDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDVKIEQV
ILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGVEDNKQKAIGILKNAAKDEKNISICSVKTKYPQGDE
RRLINAITGKKISKAQRSNERGVQGLNISSAMAIYDAVVHSIPLTHRIVTMTGSAIKEPKNIYVPVGTKFKDLVDYCDGF
KETPYKIVVGGPMMGACQYNLEAPTVKTTGGIICMNEKDATLASPEPCIKCAKCVDVCPIGLLPLFLQLKSLNGDFEGAE
KMHLNDCIECGTCSYICPSNRPLVEAIVHAKTQLKAQQRKRG

Sequences:

>Translated_442_residues
MSLENLTFKGGFHMDDHKSYTQNCPLDTNFEPKMVYIPLHQHIGAPCTPIVKVGDEVKVGQKIGESKATISAPVHSSVSG
KVMKIEQMVLSNGQKGEVVVIESDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDVKIEQV
ILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGVEDNKQKAIGILKNAAKDEKNISICSVKTKYPQGDE
RRLINAITGKKISKAQRSNERGVQGLNISSAMAIYDAVVHSIPLTHRIVTMTGSAIKEPKNIYVPVGTKFKDLVDYCDGF
KETPYKIVVGGPMMGACQYNLEAPTVKTTGGIICMNEKDATLASPEPCIKCAKCVDVCPIGLLPLFLQLKSLNGDFEGAE
KMHLNDCIECGTCSYICPSNRPLVEAIVHAKTQLKAQQRKRG
>Mature_441_residues
SLENLTFKGGFHMDDHKSYTQNCPLDTNFEPKMVYIPLHQHIGAPCTPIVKVGDEVKVGQKIGESKATISAPVHSSVSGK
VMKIEQMVLSNGQKGEVVVIESDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDVKIEQVI
LNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGVEDNKQKAIGILKNAAKDEKNISICSVKTKYPQGDER
RLINAITGKKISKAQRSNERGVQGLNISSAMAIYDAVVHSIPLTHRIVTMTGSAIKEPKNIYVPVGTKFKDLVDYCDGFK
ETPYKIVVGGPMMGACQYNLEAPTVKTTGGIICMNEKDATLASPEPCIKCAKCVDVCPIGLLPLFLQLKSLNGDFEGAEK
MHLNDCIECGTCSYICPSNRPLVEAIVHAKTQLKAQQRKRG

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=442, Percent_Identity=35.2941176470588, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI1788620, Length=251, Percent_Identity=26.2948207171315, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48264; Mature: 48132

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLENLTFKGGFHMDDHKSYTQNCPLDTNFEPKMVYIPLHQHIGAPCTPIVKVGDEVKVG
CCCCCEEECCCCCCCCCCCHHCCCCCCCCCCCEEEEEECHHHCCCCCCHHHHCCCCCHHH
QKIGESKATISAPVHSSVSGKVMKIEQMVLSNGQKGEVVVIESDGLNELGYTETNDDFTQ
HHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHH
LSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDVKIEQVILNGAECEPYLTSDQLNMEL
HHHHHHHHHHHHCCEEEECCCCCCCEEECCCCCCCEEEHHEECCCCCCCEECCCCCCEEE
YPQKAIGGLKIIMKLMDCDKGYIGVEDNKQKAIGILKNAAKDEKNISICSVKTKYPQGDE
CCHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCHH
RRLINAITGKKISKAQRSNERGVQGLNISSAMAIYDAVVHSIPLTHRIVTMTGSAIKEPK
HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCC
NIYVPVGTKFKDLVDYCDGFKETPYKIVVGGPMMGACQYNLEAPTVKTTGGIICMNEKDA
EEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCEEECCCCEEEECCCCC
TLASPEPCIKCAKCVDVCPIGLLPLFLQLKSLNGDFEGAEKMHLNDCIECGTCSYICPSN
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHCHHHHHHCCCCCEECCCC
RPLVEAIVHAKTQLKAQQRKRG
CHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLENLTFKGGFHMDDHKSYTQNCPLDTNFEPKMVYIPLHQHIGAPCTPIVKVGDEVKVG
CCCCEEECCCCCCCCCCCHHCCCCCCCCCCCEEEEEECHHHCCCCCCHHHHCCCCCHHH
QKIGESKATISAPVHSSVSGKVMKIEQMVLSNGQKGEVVVIESDGLNELGYTETNDDFTQ
HHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHH
LSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDVKIEQVILNGAECEPYLTSDQLNMEL
HHHHHHHHHHHHCCEEEECCCCCCCEEECCCCCCCEEEHHEECCCCCCCEECCCCCCEEE
YPQKAIGGLKIIMKLMDCDKGYIGVEDNKQKAIGILKNAAKDEKNISICSVKTKYPQGDE
CCHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCHH
RRLINAITGKKISKAQRSNERGVQGLNISSAMAIYDAVVHSIPLTHRIVTMTGSAIKEPK
HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCC
NIYVPVGTKFKDLVDYCDGFKETPYKIVVGGPMMGACQYNLEAPTVKTTGGIICMNEKDA
EEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCEEECCCCEEEECCCCC
TLASPEPCIKCAKCVDVCPIGLLPLFLQLKSLNGDFEGAEKMHLNDCIECGTCSYICPSN
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHCHHHHHHCCCCCEECCCC
RPLVEAIVHAKTQLKAQQRKRG
CHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]