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The map label for this gene is rnfD [H]

Identifier: 169824044

GI number: 169824044

Start: 403255

End: 404226

Strand: Direct

Name: rnfD [H]

Synonym: FMG_0347

Alternate gene names: 169824044

Gene position: 403255-404226 (Clockwise)

Preceding gene: 169824043

Following gene: 169824045

Centisome position: 22.43

GC content: 35.49

Gene sequence:

>972_bases
ATGGAAAATAAAGAAATTATACAAAAAGAATACGACTTATCTCATTTAATCGTAGAAGCTGCTCCTCATCAAAGAAGTGC
AGTATCTATTCAAAGAATTATGCTTGATGTTATCATCGCTTTAATTCCTGCTTTGATAGTGAGTGTTTACGAATTCGGAA
TGAGAAGTTTAGTTTTGGTATTATCAGCAGTTATAGCTTGTGTATTATCAGAATATTGTTATCAAAAAATAATGAAACAA
CCTTCTACAATTAGCGATTTATCAGCTGTTGTAACAGGTATGCTTTTGGCTTACAACGTTCCAGTTACTTTGCCAATTCC
AATGATTGTTATAGGATCGGTATTTTCAATCATAATTGTAAAACAATTATTTGGAGGAATTGGTTCAAACTTCATGAACC
CTGCATTAGCAGGACGTGCTTTCTTGATGGCAAGTTGGGCACAAGCAATGAGTAACTACACTGCTCCACTAACACAAAAA
GCAGTGGACGCTGAAAGTTATGCGACAGTTTTATCAGGCGGTCAACCAGTTGGTTTTATGAATGCCATCATAGGACACAT
GGGTGGTACAATCGGGGAAGTAAGTGCAATAGCATTACTTATCGGTGTAGCTTATCTATTATACAGAAGAGTAATCAATC
TTAGAATTCCATTAGTTTACATCGCAACAACATTTGTTACATTACTTATTTGTGGCGTAGGAATTCAAGACGCTTTTATG
AACATATTTATTGGTGGTTTAATCTTGGGAGCATTCTACATGGCTACAGATTATTCAACTAGTCCAGTTACTCCAAAAGG
ACAAATTATATTTGCTATTGGTTGTGGTTTCTTCACAGCGATTATAAGACAATTTGGTAACCTTCCAGAAGGTGTATCTT
ATGCGATAATCTTCATGAACTGTGCTGTACCATTTATCGATCAATATACAGTTCCAACACCAATTGGTAGAGGAGGTAAA
CAAGGAATATGA

Upstream 100 bases:

>100_bases
TACTTGCAGCTATATTTGTCCATCAAACAGACCATTAGTTGAAGCAATTGTACACGCAAAGACTCAATTAAAAGCACAAC
AAAGGAAAAGGGGATAGTCT

Downstream 100 bases:

>100_bases
GAAGTTCAATAAATTTAGCTATTAGATTGTTCATAATAACAGCAATAAGTGCGTTAGTGCTTGCATTTGCAAACCAAGTT
ACAGAACCGATTATCGAAGC

Product: electron transport complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MENKEIIQKEYDLSHLIVEAAPHQRSAVSIQRIMLDVIIALIPALIVSVYEFGMRSLVLVLSAVIACVLSEYCYQKIMKQ
PSTISDLSAVVTGMLLAYNVPVTLPIPMIVIGSVFSIIIVKQLFGGIGSNFMNPALAGRAFLMASWAQAMSNYTAPLTQK
AVDAESYATVLSGGQPVGFMNAIIGHMGGTIGEVSAIALLIGVAYLLYRRVINLRIPLVYIATTFVTLLICGVGIQDAFM
NIFIGGLILGAFYMATDYSTSPVTPKGQIIFAIGCGFFTAIIRQFGNLPEGVSYAIIFMNCAVPFIDQYTVPTPIGRGGK
QGI

Sequences:

>Translated_323_residues
MENKEIIQKEYDLSHLIVEAAPHQRSAVSIQRIMLDVIIALIPALIVSVYEFGMRSLVLVLSAVIACVLSEYCYQKIMKQ
PSTISDLSAVVTGMLLAYNVPVTLPIPMIVIGSVFSIIIVKQLFGGIGSNFMNPALAGRAFLMASWAQAMSNYTAPLTQK
AVDAESYATVLSGGQPVGFMNAIIGHMGGTIGEVSAIALLIGVAYLLYRRVINLRIPLVYIATTFVTLLICGVGIQDAFM
NIFIGGLILGAFYMATDYSTSPVTPKGQIIFAIGCGFFTAIIRQFGNLPEGVSYAIIFMNCAVPFIDQYTVPTPIGRGGK
QGI
>Mature_323_residues
MENKEIIQKEYDLSHLIVEAAPHQRSAVSIQRIMLDVIIALIPALIVSVYEFGMRSLVLVLSAVIACVLSEYCYQKIMKQ
PSTISDLSAVVTGMLLAYNVPVTLPIPMIVIGSVFSIIIVKQLFGGIGSNFMNPALAGRAFLMASWAQAMSNYTAPLTQK
AVDAESYATVLSGGQPVGFMNAIIGHMGGTIGEVSAIALLIGVAYLLYRRVINLRIPLVYIATTFVTLLICGVGIQDAFM
NIFIGGLILGAFYMATDYSTSPVTPKGQIIFAIGCGFFTAIIRQFGNLPEGVSYAIIFMNCAVPFIDQYTVPTPIGRGGK
QGI

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=29.512893982808, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 34709; Mature: 34709

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKEIIQKEYDLSHLIVEAAPHQRSAVSIQRIMLDVIIALIPALIVSVYEFGMRSLVLV
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVIACVLSEYCYQKIMKQPSTISDLSAVVTGMLLAYNVPVTLPIPMIVIGSVFSIIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KQLFGGIGSNFMNPALAGRAFLMASWAQAMSNYTAPLTQKAVDAESYATVLSGGQPVGFM
HHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
NAIIGHMGGTIGEVSAIALLIGVAYLLYRRVINLRIPLVYIATTFVTLLICGVGIQDAFM
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
NIFIGGLILGAFYMATDYSTSPVTPKGQIIFAIGCGFFTAIIRQFGNLPEGVSYAIIFMN
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHH
CAVPFIDQYTVPTPIGRGGKQGI
HCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MENKEIIQKEYDLSHLIVEAAPHQRSAVSIQRIMLDVIIALIPALIVSVYEFGMRSLVLV
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVIACVLSEYCYQKIMKQPSTISDLSAVVTGMLLAYNVPVTLPIPMIVIGSVFSIIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KQLFGGIGSNFMNPALAGRAFLMASWAQAMSNYTAPLTQKAVDAESYATVLSGGQPVGFM
HHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
NAIIGHMGGTIGEVSAIALLIGVAYLLYRRVINLRIPLVYIATTFVTLLICGVGIQDAFM
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
NIFIGGLILGAFYMATDYSTSPVTPKGQIIFAIGCGFFTAIIRQFGNLPEGVSYAIIFMN
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHH
CAVPFIDQYTVPTPIGRGGKQGI
HCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA