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The map label for this gene is pafB [H]

Identifier: 169629271

GI number: 169629271

Start: 2199477

End: 2200469

Strand: Direct

Name: pafB [H]

Synonym: MAB_2185

Alternate gene names: 169629271

Gene position: 2199477-2200469 (Clockwise)

Preceding gene: 169629270

Following gene: 169629272

Centisome position: 43.41

GC content: 67.88

Gene sequence:

>993_bases
GTGGCGATCTCCAAAGTCGAGCGGTTGATGAACCTGGTGATCTGCCTGCTGTCCACTCGTACCTACGTCACGGCCGAACG
GATCCGGACCTCGGTGGCCGGGTACTCGGATTCGCCGAGTGACGAGGCCTTCAGCCGGATGTTCGAGCGCGACAAGAACG
AACTGCGCGATTTGGGCATCCCGCTGGAGACGGGCAAGGTGTCGTCCTTCGACGCCACCGAGGGCTATCGGATCCGGCGT
GACGCCTACGAGCTGCCGGATATCACGCTTACCGCAGACGAGTCCGCGGCCGTCGCCGTCGCCACCCAGTTGTGGCAGTC
GCCCGAGCTGGTCACCGCCGCACAGGGTGCGCTGATGAAGCTGCGTGCGGCGGGCGTCGACGTCGACCCGGCGGCCGAGA
ATGTCTCCGTGGCCGCACCGGCCGCCATGCCGGGCGGACGCGGGTCGGAATCGGTATTACGGATTCTGTTGTCCGCCATC
GACTCCGGGCAGGCGGTGCAGTTCGGGCACCGTCCTTCGCGCACGGAGCCATACGTCACCCGTACGGTCGAGCCCTGGGG
CGTGATCACCGATAGGGGACGCTGGTACCTGGTCGGACATGATCGGGACCGGGACGCCACCCGTACCTTTCGCCTTTCCC
GTATCGGCGAGGACGTCACCAAAATCGAGAAGCCGGGAACGATCCGCCGCCCCGAGGGCGCCGACCTGCGTGCCATCGTC
GCCGCCGCCGTGGGAGACGGACCGGTGCGGATCACCGCTCGGGTCTGGATCGCCGAAGGGCGCGCGCAGGAACTGCGCCG
GATGGGCGTCGTGGTCGACTCACGCCGTCTGGGGGAACGTGACGGGGACATCGTCGAGATCGACGTCGCCTCACCGGATC
GGCTCGTCCGGTCCATCGCCTCACACGGTGCCGACGCCGTGGCGCTGGAACCGGCACAGGTGCGCGACGAGGTCGTGGCC
CGGCTTCAGGAGCAGGCAGGAGTCACCGCATGA

Upstream 100 bases:

>100_bases
CGAAATGCAGCGATCTACTCGACCTTTCGCTGCATAACGCGGCTCCGGGTGTTCGCGCGTCCTCTCGAACAAACTTTCGC
CGTCCTCTAAGCTTTCCGCC

Downstream 100 bases:

>100_bases
CCGAGCTGTCGAACAGGCTCACGCGACTGCTGAACATGGTTCCGTACTTCCAGGCCAATCCGGGTATCAGCGCGGCCGAG
GCCGCCGCGGACCTGGGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MAISKVERLMNLVICLLSTRTYVTAERIRTSVAGYSDSPSDEAFSRMFERDKNELRDLGIPLETGKVSSFDATEGYRIRR
DAYELPDITLTADESAAVAVATQLWQSPELVTAAQGALMKLRAAGVDVDPAAENVSVAAPAAMPGGRGSESVLRILLSAI
DSGQAVQFGHRPSRTEPYVTRTVEPWGVITDRGRWYLVGHDRDRDATRTFRLSRIGEDVTKIEKPGTIRRPEGADLRAIV
AAAVGDGPVRITARVWIAEGRAQELRRMGVVVDSRRLGERDGDIVEIDVASPDRLVRSIASHGADAVALEPAQVRDEVVA
RLQEQAGVTA

Sequences:

>Translated_330_residues
MAISKVERLMNLVICLLSTRTYVTAERIRTSVAGYSDSPSDEAFSRMFERDKNELRDLGIPLETGKVSSFDATEGYRIRR
DAYELPDITLTADESAAVAVATQLWQSPELVTAAQGALMKLRAAGVDVDPAAENVSVAAPAAMPGGRGSESVLRILLSAI
DSGQAVQFGHRPSRTEPYVTRTVEPWGVITDRGRWYLVGHDRDRDATRTFRLSRIGEDVTKIEKPGTIRRPEGADLRAIV
AAAVGDGPVRITARVWIAEGRAQELRRMGVVVDSRRLGERDGDIVEIDVASPDRLVRSIASHGADAVALEPAQVRDEVVA
RLQEQAGVTA
>Mature_329_residues
AISKVERLMNLVICLLSTRTYVTAERIRTSVAGYSDSPSDEAFSRMFERDKNELRDLGIPLETGKVSSFDATEGYRIRRD
AYELPDITLTADESAAVAVATQLWQSPELVTAAQGALMKLRAAGVDVDPAAENVSVAAPAAMPGGRGSESVLRILLSAID
SGQAVQFGHRPSRTEPYVTRTVEPWGVITDRGRWYLVGHDRDRDATRTFRLSRIGEDVTKIEKPGTIRRPEGADLRAIVA
AAVGDGPVRITARVWIAEGRAQELRRMGVVVDSRRLGERDGDIVEIDVASPDRLVRSIASHGADAVALEPAQVRDEVVAR
LQEQAGVTA

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35885; Mature: 35754

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISKVERLMNLVICLLSTRTYVTAERIRTSVAGYSDSPSDEAFSRMFERDKNELRDLGI
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PLETGKVSSFDATEGYRIRRDAYELPDITLTADESAAVAVATQLWQSPELVTAAQGALMK
CCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHH
LRAAGVDVDPAAENVSVAAPAAMPGGRGSESVLRILLSAIDSGQAVQFGHRPSRTEPYVT
HHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
RTVEPWGVITDRGRWYLVGHDRDRDATRTFRLSRIGEDVTKIEKPGTIRRPEGADLRAIV
EECCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHE
AAAVGDGPVRITARVWIAEGRAQELRRMGVVVDSRRLGERDGDIVEIDVASPDRLVRSIA
EECCCCCCEEEEEEEEEECCHHHHHHHHCCEECHHHCCCCCCCEEEEECCCHHHHHHHHH
SHGADAVALEPAQVRDEVVARLQEQAGVTA
HCCCCEEEECHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AISKVERLMNLVICLLSTRTYVTAERIRTSVAGYSDSPSDEAFSRMFERDKNELRDLGI
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PLETGKVSSFDATEGYRIRRDAYELPDITLTADESAAVAVATQLWQSPELVTAAQGALMK
CCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHH
LRAAGVDVDPAAENVSVAAPAAMPGGRGSESVLRILLSAIDSGQAVQFGHRPSRTEPYVT
HHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
RTVEPWGVITDRGRWYLVGHDRDRDATRTFRLSRIGEDVTKIEKPGTIRRPEGADLRAIV
EECCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHE
AAAVGDGPVRITARVWIAEGRAQELRRMGVVVDSRRLGERDGDIVEIDVASPDRLVRSIA
EECCCCCCEEEEEEEEEECCHHHHHHHHCCEECHHHCCCCCCCEEEEECCCHHHHHHHHH
SHGADAVALEPAQVRDEVVARLQEQAGVTA
HCCCCEEEECHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]