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The map label for this gene is pafC [H]

Identifier: 169629272

GI number: 169629272

Start: 2200466

End: 2201422

Strand: Direct

Name: pafC [H]

Synonym: MAB_2186

Alternate gene names: 169629272

Gene position: 2200466-2201422 (Clockwise)

Preceding gene: 169629271

Following gene: 169629273

Centisome position: 43.43

GC content: 67.61

Gene sequence:

>957_bases
ATGACCGAGCTGTCGAACAGGCTCACGCGACTGCTGAACATGGTTCCGTACTTCCAGGCCAATCCGGGTATCAGCGCGGC
CGAGGCCGCCGCGGACCTGGGTGTCACCACCAAGCAGCTGATGGCCGATCTGAACCAGCTGTGGATGTGCGGGCTACCCG
GGTACGGGCCCGGGGATCTGATCGATCTGTCCTTCTCCGAGGAGAGCATCGAGGTGACCTTCTCGGCGGGCATCGACCGG
CCGCTGCGCCTCACCTCGCCAGAGGCCACGGCACTGTTGGTCGCGCTGCGCGCGCTGCTGGACATGCCCGGCACCGTCGA
TCCAGAGGCCGCGCGCAGCGCCATCGCCAAGATCGAGGAGGCCGTGGGCGCGCTACCTACCGACGCGGCGCCCGCGCCGT
TGTCCGCCCGCACCGAATCCGAGGCGGTGACCGCGGTGCGCTCGGCGGTGCGCAACCGGCAGGCACTGCGTATCGAATAC
TATTCGGCATCGCGAGACACGTTGTCGGAGCGAATTGTTGACCCGATTCGTATCGCGGTGGTGGGAGACCACAGCTACCT
GGAAGCCTGGTGCCGAGGGTCCGAGGGTGTGCGGTTGTTCCGATTCGACCGCATAGAGCAGGCCGAGGTTCTCGACCAGC
GCGCCGCCCCTCCCGCCCCAGCGGTCCAGACGGCCACCGATACGGGCCTGTTCGAGGCGGATCCGTCGCTACCGGCGGCG
ACCGTGATCGTGGGCCCGAGTGCGTCCTGGGTTTTCGACTACTTCCCGATGCGCCCGACCGGTACCCAGCATCCCGACGG
ATCGCTGGAGGCCGCAATGACCTACGCCTCAGAGGACTGGATGGCACGGTTGATCCTCGGTTTTGGATCGGCGATCCGGG
TGCTGGCACCCGAGTCGCTGGCGCGCCGGGTTCGTGCCGATGCGACCGCGGCACTGGCGGCCTATCAGGCCAGCTGA

Upstream 100 bases:

>100_bases
GGTCCATCGCCTCACACGGTGCCGACGCCGTGGCGCTGGAACCGGCACAGGTGCGCGACGAGGTCGTGGCCCGGCTTCAG
GAGCAGGCAGGAGTCACCGC

Downstream 100 bases:

>100_bases
CCGCCCCGGGGCCTGGGGTAGCATTCAAGGCATACACGACGTCTGGAGGTGACCACATTGGGCGGTCTACAACCCATGCA
CTGGGTGATCGTAATCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTELSNRLTRLLNMVPYFQANPGISAAEAAADLGVTTKQLMADLNQLWMCGLPGYGPGDLIDLSFSEESIEVTFSAGIDR
PLRLTSPEATALLVALRALLDMPGTVDPEAARSAIAKIEEAVGALPTDAAPAPLSARTESEAVTAVRSAVRNRQALRIEY
YSASRDTLSERIVDPIRIAVVGDHSYLEAWCRGSEGVRLFRFDRIEQAEVLDQRAAPPAPAVQTATDTGLFEADPSLPAA
TVIVGPSASWVFDYFPMRPTGTQHPDGSLEAAMTYASEDWMARLILGFGSAIRVLAPESLARRVRADATAALAAYQAS

Sequences:

>Translated_318_residues
MTELSNRLTRLLNMVPYFQANPGISAAEAAADLGVTTKQLMADLNQLWMCGLPGYGPGDLIDLSFSEESIEVTFSAGIDR
PLRLTSPEATALLVALRALLDMPGTVDPEAARSAIAKIEEAVGALPTDAAPAPLSARTESEAVTAVRSAVRNRQALRIEY
YSASRDTLSERIVDPIRIAVVGDHSYLEAWCRGSEGVRLFRFDRIEQAEVLDQRAAPPAPAVQTATDTGLFEADPSLPAA
TVIVGPSASWVFDYFPMRPTGTQHPDGSLEAAMTYASEDWMARLILGFGSAIRVLAPESLARRVRADATAALAAYQAS
>Mature_317_residues
TELSNRLTRLLNMVPYFQANPGISAAEAAADLGVTTKQLMADLNQLWMCGLPGYGPGDLIDLSFSEESIEVTFSAGIDRP
LRLTSPEATALLVALRALLDMPGTVDPEAARSAIAKIEEAVGALPTDAAPAPLSARTESEAVTAVRSAVRNRQALRIEYY
SASRDTLSERIVDPIRIAVVGDHSYLEAWCRGSEGVRLFRFDRIEQAEVLDQRAAPPAPAVQTATDTGLFEADPSLPAAT
VIVGPSASWVFDYFPMRPTGTQHPDGSLEAAMTYASEDWMARLILGFGSAIRVLAPESLARRVRADATAALAAYQAS

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34050; Mature: 33919

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELSNRLTRLLNMVPYFQANPGISAAEAAADLGVTTKQLMADLNQLWMCGLPGYGPGDL
CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCE
IDLSFSEESIEVTFSAGIDRPLRLTSPEATALLVALRALLDMPGTVDPEAARSAIAKIEE
EEEEECCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AVGALPTDAAPAPLSARTESEAVTAVRSAVRNRQALRIEYYSASRDTLSERIVDPIRIAV
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCEEEEE
VGDHSYLEAWCRGSEGVRLFRFDRIEQAEVLDQRAAPPAPAVQTATDTGLFEADPSLPAA
ECCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCEE
TVIVGPSASWVFDYFPMRPTGTQHPDGSLEAAMTYASEDWMARLILGFGSAIRVLAPESL
EEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECHHHH
ARRVRADATAALAAYQAS
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TELSNRLTRLLNMVPYFQANPGISAAEAAADLGVTTKQLMADLNQLWMCGLPGYGPGDL
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCE
IDLSFSEESIEVTFSAGIDRPLRLTSPEATALLVALRALLDMPGTVDPEAARSAIAKIEE
EEEEECCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AVGALPTDAAPAPLSARTESEAVTAVRSAVRNRQALRIEYYSASRDTLSERIVDPIRIAV
HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCEEEEE
VGDHSYLEAWCRGSEGVRLFRFDRIEQAEVLDQRAAPPAPAVQTATDTGLFEADPSLPAA
ECCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCEE
TVIVGPSASWVFDYFPMRPTGTQHPDGSLEAAMTYASEDWMARLILGFGSAIRVLAPESL
EEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECHHHH
ARRVRADATAALAAYQAS
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]