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The map label for this gene is yfdE [H]

Identifier: 169628950

GI number: 169628950

Start: 1859159

End: 1859977

Strand: Direct

Name: yfdE [H]

Synonym: MAB_1862

Alternate gene names: 169628950

Gene position: 1859159-1859977 (Clockwise)

Preceding gene: 169628948

Following gene: 169628951

Centisome position: 36.69

GC content: 68.5

Gene sequence:

>819_bases
GTGCTGCCCCTGACCGGCGTGAATGTGGTGTCCCTGGCGATCAACCTGCCCGGGCCCGCGGCATGTGCCCGGCTCGCCGA
ATTCGGAGCCGCGGTGACCAAGGTCGAACCGCCCGGCGGTGACCCGTTGGCCCGAGCCGCCTCAGGCTGGTATGCGGAAC
TCGCGGGAAGGCAGACGGTGTTGACGCTGGATCTCAAGGCTGCCGCCGACCGCGCCACGCTCGACGAGCTGCTCACCGGG
GCCGACCTACTGATCACCTCGATGCGGCCGACGGCACTACAACGCCTGGGTCTGGCCGCCCCACACGAACAGTTCCCGCG
GCTCTCGCTCATCGAAATCGTGGGCCACGATGGCGATCTGGCCGACGAGCCCGGACATGATCTCAACTACCAGGCTGCCC
AGGGCACGCTGACACCGCCGCATATGCCCAGGGTGCCGCTGGCCGACCTGCTGGGCGCCGAACGCGCGGTGAGTACCGCG
CTGGCCGCCCTGCAGGCGCGTGACCGGAGCGGGGGCGGAGCCGTCTTCCGCGTCGCGCTGGCGGATGCCGCGGCCTGGGC
CGGCGGAGCGGTGCGGCACGGACTGATGGGGGACAACGCCATTCTGGGCGGTGCGTTTCCTGGCTACGGAATCTACGAAT
GCGCCGACGGGCACGTCGCCCTCGGTGCGCTCGAATCGCACTTCTATGTCCGCACGCTGGAGATCTTCGGGGCCGACGGC
ACACATGAAAGTCTGCGTACCGCGTTCTCCGGCAAGACCATCGCCCAGCTCGAAGCCATTGCGGCCGAGGCCGATATCCC
TCTGAATGGAGTGAAGTAA

Upstream 100 bases:

>100_bases
GCTAGCGCGCGGGTTTGCCATGAGTGCCATCGTACCGCACCCCTTTACAAATGAATTTCAAACGATACGCTTGTATCGTC
TCGACGAGGAGGTCTTTGAC

Downstream 100 bases:

>100_bases
TGTCCGAACTGTTCCCTGCCTACCGTGCGTCCTGGGAGACCGACGCGCACCGCGACCTGCGTAAGCATGCCGCCGAATTC
CTGCGCAAGGAATCCACGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLPLTGVNVVSLAINLPGPAACARLAEFGAAVTKVEPPGGDPLARAASGWYAELAGRQTVLTLDLKAAADRATLDELLTG
ADLLITSMRPTALQRLGLAAPHEQFPRLSLIEIVGHDGDLADEPGHDLNYQAAQGTLTPPHMPRVPLADLLGAERAVSTA
LAALQARDRSGGGAVFRVALADAAAWAGGAVRHGLMGDNAILGGAFPGYGIYECADGHVALGALESHFYVRTLEIFGADG
THESLRTAFSGKTIAQLEAIAAEADIPLNGVK

Sequences:

>Translated_272_residues
MLPLTGVNVVSLAINLPGPAACARLAEFGAAVTKVEPPGGDPLARAASGWYAELAGRQTVLTLDLKAAADRATLDELLTG
ADLLITSMRPTALQRLGLAAPHEQFPRLSLIEIVGHDGDLADEPGHDLNYQAAQGTLTPPHMPRVPLADLLGAERAVSTA
LAALQARDRSGGGAVFRVALADAAAWAGGAVRHGLMGDNAILGGAFPGYGIYECADGHVALGALESHFYVRTLEIFGADG
THESLRTAFSGKTIAQLEAIAAEADIPLNGVK
>Mature_272_residues
MLPLTGVNVVSLAINLPGPAACARLAEFGAAVTKVEPPGGDPLARAASGWYAELAGRQTVLTLDLKAAADRATLDELLTG
ADLLITSMRPTALQRLGLAAPHEQFPRLSLIEIVGHDGDLADEPGHDLNYQAAQGTLTPPHMPRVPLADLLGAERAVSTA
LAALQARDRSGGGAVFRVALADAAAWAGGAVRHGLMGDNAILGGAFPGYGIYECADGHVALGALESHFYVRTLEIFGADG
THESLRTAFSGKTIAQLEAIAAEADIPLNGVK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=250, Percent_Identity=30.8, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=30.8, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI266456254, Length=250, Percent_Identity=30.8, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI266458393, Length=250, Percent_Identity=30.4, Blast_Score=82, Evalue=4e-16,
Organism=Escherichia coli, GI87082093, Length=212, Percent_Identity=32.5471698113208, Blast_Score=87, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=258, Percent_Identity=30.2325581395349, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=258, Percent_Identity=27.1317829457364, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24585488, Length=300, Percent_Identity=29.6666666666667, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 28019; Mature: 28019

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLTGVNVVSLAINLPGPAACARLAEFGAAVTKVEPPGGDPLARAASGWYAELAGRQTV
CCCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCHHHHHCCCEEE
LTLDLKAAADRATLDELLTGADLLITSMRPTALQRLGLAAPHEQFPRLSLIEIVGHDGDL
EEEEEHHHCCHHHHHHHHCCCHHEEECCCHHHHHHHCCCCCHHHCCCEEEEEEECCCCCC
ADEPGHDLNYQAAQGTLTPPHMPRVPLADLLGAERAVSTALAALQARDRSGGGAVFRVAL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
ADAAAWAGGAVRHGLMGDNAILGGAFPGYGIYECADGHVALGALESHFYVRTLEIFGADG
HHHHHHCCHHHHHCCCCCCEEECCCCCCCCCEEECCCCEEEEECCCCEEEEEEEEECCCC
THESLRTAFSGKTIAQLEAIAAEADIPLNGVK
CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLPLTGVNVVSLAINLPGPAACARLAEFGAAVTKVEPPGGDPLARAASGWYAELAGRQTV
CCCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCHHHHHCCCEEE
LTLDLKAAADRATLDELLTGADLLITSMRPTALQRLGLAAPHEQFPRLSLIEIVGHDGDL
EEEEEHHHCCHHHHHHHHCCCHHEEECCCHHHHHHHCCCCCHHHCCCEEEEEEECCCCCC
ADEPGHDLNYQAAQGTLTPPHMPRVPLADLLGAERAVSTALAALQARDRSGGGAVFRVAL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
ADAAAWAGGAVRHGLMGDNAILGGAFPGYGIYECADGHVALGALESHFYVRTLEIFGADG
HHHHHHCCHHHHHCCCCCCEEECCCCCCCCCEEECCCCEEEEECCCCEEEEEEEEECCCC
THESLRTAFSGKTIAQLEAIAAEADIPLNGVK
CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]