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The map label for this gene is xylA [H]

Identifier: 16766946

GI number: 16766946

Start: 3846467

End: 3847789

Strand: Reverse

Name: xylA [H]

Synonym: STM3661

Alternate gene names: 16766946

Gene position: 3847789-3846467 (Counterclockwise)

Preceding gene: 16766948

Following gene: 16766945

Centisome position: 79.21

GC content: 53.51

Gene sequence:

>1323_bases
ATGCAGGCTTATTTTGACCAACTCGATCGTGTTCGCTATGAAGGCCCTCAATCGACTAACCCGCTGGCATTTCGTCATTA
CAATCCCGACGAGCTGGTTTTAGGTAAACGTATGGAAGATCACCTGCGTTTCGCGGCCTGTTACTGGCATACCTTCTGCT
GGAACGGCGCGGATATGTTTGGTGTAGGCGCGTTTAATCGTCCGTGGCAGCAACCGGGCGAAGCGCTGGAGCTGGCGAAA
CGCAAAGCGGATGTGGCGTTTGAATTTTTCCACAAACTGAATGTGCCTTTTTACTGCTTCCATGACGTGGATGTGTCGCC
GGAAGGCGCGTCGTTGAAAGAATATAAAAACAACTTCGCGCAGATGGTGGATGTGCTGGCGGCGAAACAGGAGCAGAGCG
GCGTAAAACTGCTGTGGGGAACGGCGAACTGCTTTACCAACCCGCGCTATGGCGCAGGCGCCGCCACTAACCCGGATCCG
GAAGTCTTTAGCTGGGCAGCGACGCAAGTGGTTACGGCAATGAACGCCACGCATAAACTGGGCGGCGAAAATTACGTCCT
GTGGGGCGGGCGCGAAGGTTATGAAACGTTGCTGAATACCGATCTGCGCCAGGAACGCGAACAGATTGGCCGCTTTATGC
AAATGGTGGTCGAGCACAAACATAAAATGGGTTTCCAGGGCACACTGCTGATTGAACCGAAACCGCAGGAACCGACAAAA
CATCAGTATGATTATGACGTTGCAACGGTCTATGGCTTCCTCAAACAGTTCGGCCTGGAAAAAGAGATCAAAGTGAACAT
TGAGGCGAACCACGCGACGCTGGCGGGCCATTCGTTCCACCATGAAATCGCAACCGCTATCGCGCTGGGTATTTTTGGCT
CCGTTGACGCCAACCGCGGCGATGCGCAACTGGGCTGGGATACCGATCAGTTCCCGATTAGCGTTGAAGAGAACGCGCTG
GTGATGTACGAAATCCTGAAAGCGGGCGGATTCACGACGGGCGGTCTCAACTTCGACGCCAAAGTTCGTCGCCAGAGCAC
CGATAAATACGATCTGTTCTACGGTCATATCGGCGCGATGGATACGATGGCGTTGTCGCTGAAAATCGCCGCGCGTATGG
TTGAAGACGGCGAGCTGGATAAACGCGTGGCGAAGCGCTATGCCGGCTGGAATGGCGAGCTGGGTCAGCAGATTCTGAAA
GGACAACTCTCCTTAGGCGAACTGGCGCAGTATGCGGAGCAGCATAATCTGGCGCCAGTACATCAAAGCGGTCATCAGGA
GCTGTTAGAAAATCTGGTTAACCGTTATCTGTTTGATAAATAA

Upstream 100 bases:

>100_bases
TAATAGCGGTGTGAAATAACGTAATTGAGCAATAAATCAGGAAATTCCAGTATGACGTTATGTCGTTTACTTGCCGTCTT
ATCTGATTATGGAGCTCACT

Downstream 100 bases:

>100_bases
CCCTATCTACCGGGCGACTCCGCGTTAGCCCGGCCTGTAGTCGTGATTAGCCCGGTAAGCGTAGCGCTGCCGGGCGCTTT
CAGTAAAGGAACCCACACTA

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAK
RKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSWAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILK
GQLSLGELAQYAEQHNLAPVHQSGHQELLENLVNRYLFDK

Sequences:

>Translated_440_residues
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAK
RKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSWAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILK
GQLSLGELAQYAEQHNLAPVHQSGHQELLENLVNRYLFDK
>Mature_440_residues
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAK
RKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSWAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILK
GQLSLGELAQYAEQHNLAPVHQSGHQELLENLVNRYLFDK

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=440, Percent_Identity=92.5, Blast_Score=866, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49702; Mature: 49702

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMF
CCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
GVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFA
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
QMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMNATHKL
HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCHH
DTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCH
HQSGHQELLENLVNRYLFDK
HCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMF
CCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
GVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFA
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
QMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMNATHKL
HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCHH
DTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCH
HQSGHQELLENLVNRYLFDK
HCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA