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The map label for this gene is ygbN [C]

Identifier: 16766219

GI number: 16766219

Start: 3055549

End: 3057045

Strand: Reverse

Name: ygbN [C]

Synonym: STM2913

Alternate gene names: 16766219

Gene position: 3057045-3055549 (Counterclockwise)

Preceding gene: 16766220

Following gene: 16766217

Centisome position: 62.94

GC content: 58.58

Gene sequence:

>1497_bases
ATGACAAGTTTACCGACCCCAATTATCGGTCTGATCGTTGCCGTTTTCGTGCTGGTATGGCTGGTGTTACGCACCCGTGT
TCATGCGCTGATCGCGATGCTGGCGGCGGCCTGTATTGCCGGTCTGTTGGGGGGAATGGGCATTGATAAAACGCTCTCTG
TCATCACCAGCGGATTCGGTACGACGCTGGGCAGCATTGGCCTGGTGATTGGTCTCGGCGTAATGATGGGGCGCTTGCTG
GAGGTTTCCGGCGCGGCGGAGCGTATCGCCTGGAGCTTTATCAAATGGCTGGGGAAACGCCGTGAAGAGTGGGCGCTGGC
GATCACGGGTTATATTGTCAGCATCCCCATTTTCGTCGATTCCGCTTTTGTCATTCTTTATCCGGTGGCGAAAGCGCTGG
CGAAAAGCGGTAAGCGTTCGCTACTGACGCTGGGCGTCGCGCTGGCGGGCGGGCTGGTGGTCACTCACCATACGGTACCT
CCGACGCCCGGTCCGCTGGGGGTAGCCGGGATTTTTAACGTCGACATCGGCGCAATGTTATTGACCGGGATGGCGCTGGC
GGTGCCCTGTGTGATCGGCATTGTGTTCTATGCGCAGTGGCTGGATAAACGCTACCCTGATTTCGTGCCGCGCACGCTGA
ACGCCGATGAAGTCAATGCCGCGCTGGAGCAGTACAATAAAGAGAAAGAGCAAAAGGAACTGCCGAGCCTGACGCTTTCT
CTGCTGCCTATTGTGGTGCCGATCGTGCTGATCTTCCTGAAGGCTATCTGTTCCACCCTCGCCACTGTAGAAGGATGGTC
CGGCCTGGCGACGCATCCGGTGGTACAGGCAATCAACTTTGTGGGAAGTCCGGTGATCGCGTTGGCCATCAGCGTTCTGC
TGGCGGTGTATACGCTGGTGCCGCGCATGGATAAACATACCACCGCAGAGCGTCTGGAAGAGGGCTTGCAAAGCGCCGGG
ATTATCTTACTGGTCACGGGCGCTGGCGGCGCGTTGGGCGCGATCCTGCGCGACAGCGGCGCGGGGCAACAGCTGGCGGA
GCAGGTTGCCAACCTGCCGATCTCGCCGATCCTGATCCCGTTTATCGTGGCGACGTTGGTACGCCTGATTCAGGGATCGG
GGACGGTGGCGATGATCACTGCCGCCTCGATTTCCGCGCCGATCCTGGCGCAGATCCCCGGCATCAATATGTTGCTTGCC
GCTCAGGCCGCAACGATGGGGTCGCTGTTCTTCGGCTACTTCAACGATAGCCTGTTCTGGGTGGTTAACCGCATGATGGG
TGTCTCTGATGTCAAACAGCAGATGGTGGTTTGGTCTGTACCGACGACCATTGCCTGGGCGATTGGCGGCACCGGCGTGG
TGCTGATTAACCTGCTGTTCGGTTCCGGCGGTAGTTGGCTCGATCCGTTACTGCCGATTGTTGTTCTGGCGGCAATTATG
CTGTGGGTGCGTTGGCAGGCGCAGGGGATCAAAGACAAGCTGGTAGTTAAGGATTAA

Upstream 100 bases:

>100_bases
GTATCGATAACCAGCGTGCGCTGGCGTTAGGTTTTGTCGCCGATAAACGCTTCGATGACATTATCGAACGCTTTCGACAA
GATGATATGGAGGGGAGGTC

Downstream 100 bases:

>100_bases
GACAGTATTATCCGTCCGGGAGCGCAATGCTCCCGGACTGGCTACGATGATGGGGCGTGCTCCCCGCAATCCCATTGCGA
ACGTAAAAAATCAATAAATG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MTSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLGGMGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLL
EVSGAAERIAWSFIKWLGKRREEWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVP
PTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKELPSLTLS
LLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQAINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAG
IILLVTGAGGALGAILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLLA
AQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVVLINLLFGSGGSWLDPLLPIVVLAAIM
LWVRWQAQGIKDKLVVKD

Sequences:

>Translated_498_residues
MTSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLGGMGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLL
EVSGAAERIAWSFIKWLGKRREEWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVP
PTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKELPSLTLS
LLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQAINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAG
IILLVTGAGGALGAILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLLA
AQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVVLINLLFGSGGSWLDPLLPIVVLAAIM
LWVRWQAQGIKDKLVVKD
>Mature_497_residues
TSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLGGMGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLLE
VSGAAERIAWSFIKWLGKRREEWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVPP
TPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKELPSLTLSL
LPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQAINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGI
ILLVTGAGGALGAILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLLAA
QAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVVLINLLFGSGGSWLDPLLPIVVLAAIML
WVRWQAQGIKDKLVVKD

Specific function: Unknown

COG id: COG2610

COG function: function code GE; H+/gluconate symporter and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gntP permease family [H]

Homologues:

Organism=Escherichia coli, GI48994935, Length=459, Percent_Identity=33.9869281045752, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1789097, Length=436, Percent_Identity=33.4862385321101, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1790716, Length=458, Percent_Identity=31.6593886462882, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1788707, Length=454, Percent_Identity=33.0396475770925, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI2367370, Length=404, Percent_Identity=31.4356435643564, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI48994939, Length=465, Percent_Identity=30.3225806451613, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1790776, Length=429, Percent_Identity=28.6713286713287, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003474 [H]

Pfam domain/function: PF02447 GntP_permease [H]

EC number: NA

Molecular weight: Translated: 52514; Mature: 52382

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLGGMGIDKTLSVITSGFG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
TTLGSIGLVIGLGVMMGRLLEVSGAAERIAWSFIKWLGKRREEWALAITGYIVSIPIFVD
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHEEEHHHHHHHHHHC
SAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVPPTPGPLGVAGIFNVDIGAML
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
LTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKELPSLTLS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQAINFVGSPVIALAISVLLAVYTLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
PRMDKHTTAERLEEGLQSAGIILLVTGAGGALGAILRDSGAGQQLAEQVANLPISPILIP
CCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
FIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLLAAQAATMGSLFFGYFNDSLFW
HHHHHHHHHHCCCCCEEEEEEHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
VVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVVLINLLFGSGGSWLDPLLPIVVLAAIM
HHHHHHCHHHHHHHHEEEECCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LWVRWQAQGIKDKLVVKD
HHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]