Click here to switch to the map view.

The map label for this gene is pbuA [H]

Identifier: 167626192

GI number: 167626192

Start: 5196470

End: 5198602

Strand: Reverse

Name: pbuA [H]

Synonym: Shal_4287

Alternate gene names: 167626192

Gene position: 5198602-5196470 (Counterclockwise)

Preceding gene: 167626193

Following gene: 167626191

Centisome position: 99.46

GC content: 46.18

Gene sequence:

>2133_bases
ATGTCTGTTGGGACGTCATTTAAGTTTTCACGTTTAGGCCTAGCAATCGTTGCTGCATTGGCTTCATCTTCTGCATTTGC
CGAGGATACAAGTGCTGAATCCACTATTGTAGCCGAGCCAAATATCGAGCGCATCAGCGTTACCGGTCGTAGCTTTAATG
ATTATAATGTTGGTTCATCTTCAGGCGCGATGCGTGGTGATATCGACATCTTGGACACGCCTCAATCTGTCACTGTAATC
CCTGACTTCGTTACCGATGAGCAGCTAGCGACTAACCTTTCGGAAGTTCTCGTTAATGACTCAAGCGTGACAGGTGGCTC
TGAGAAGTGGAACCGCCAAGTATTCAACATTCGTGGTTTCGAACTCTCTTCAGGCTCAGGTTTCTTAATTAATGGTCAGC
AGCAGTGGTCTCACTATGTACAGCCAATCGAAACGCTGCAGCAGGTTGAGGTATTAAAAGGCCCTTCGAGCATGCTTTAT
GGTCAGTCTGGTCCTGGTGGCTTGATCAACATGGTTACCAAGAAGCCTACCTATGAAACTATGTTAGATATTGGCTTCGA
TACCGATGAGAATGGCTCGACACGTTTCCAACTCGATGCCGGTGGCAGCCTCAACGAAGCCGAAACAATTCGTTACCGCA
CCGTGTTAGTTAAGCAAGACACTACCTACTGGAGAGAGTATCAAGATGGCAGCCATCAGGAGCGCGACCGTTGGTTAGGT
TACCTAAACCTAGAGTTTGATATTACCGATGATCTACTGCTATCGCTTAAGTATGACCATACTCAAGACAAGACTGGTAT
AGATCGTGGTGGCTGGCTAGATAGCAGTGGTGACTTGATTGGTGGCCGTGACATCATCTGGGATCAGCCATGGGCATTTA
CCGATAACACTATCTCTAACCTAGGTGCCGAGCTAACTTATCACCTAACAGATGATTGGAAAGTTAAAGCGGGCTATAAC
GACCAGCAGTTTAACCGTCAGCGTTTAGACTCTTCTCCATCACTAATTAGTGGTTCTGAAGATCCATTTACAGATGGTTA
TTACATAAGCCCGTTTGACCGTTATGATGATTGGCAACACAAGACGGGTTTTGTTGATTTCACCGGTAACTTCTACACGG
GTGATTTAGAGCATCAACTACTTATCGGCGCTAACATGCTCGATTATTACTATGGTCAGTTAAAAGAGTCTGGTGAAAAG
AAACAAGTTGTGATGCCTGGACAGCCAGTACCTAAGCCAGATCTTGATTACAATCGTGATGTAACTAAGTACGAGAGTGA
ATACAAGCACTACGGCTTCTACGTTCAAGACCTAGTGACGATTACCGATGAGTGGCAAGTGCTTGCTGGTGTGCGTTACG
ACGAGCAGAAAAAAGAGGGAGCTGGTAGTAACAGCTATGCGGTCTCGCCTAAGTTTGGTGTGATCTACTCGCCTGCTGAT
AACGGTAGCATCTACGTTAACTACTCGAAGAGTTTTACTCCTCAAGGAATAGTGAACAACATTGATGACGTTAACGATGG
TAAGAACCTAGATCCTGAGTACGGCGAGCAATATGAAATTGGCACCAAGTGGGAGCTGTTTGATGGCAGTCTACTATTAA
CCGGTGCGGTATTTGATATCACGGTATCAAATGTGACGGTAACCGAAGAGATTGAAGGTAGTAGCCAAACCATTACTACT
CAGTCTGGTGAGCAGCGCCATAAAGGTTTCGAGATGGGCGCTCAAGGTCAGGTCAGCGATAGCTGGTTTATGACGGGCTC
TATGATGTACCTAGATGCAGAGTATCTTCGTCCAGAAACCGATAGCCTAAACGGTAAGACACCTGTCGATGCGCCAGAGT
GGTCGGCAAACGTTTGGACACGTTATGAGATGACCGATGATTTAGCATTCAACTTCGGCGCTCTCTATGTGGGTGAGCGT
TTTGCCAATACGAGCAACACGATCAGTAAAGATGGTTATGTACGTTTCGATATGGGCGCCGCATACACTATGGACGTAAT
GGGTAGCGATGTGAGTGTTCGTGTAAACGTGAAGAATCTATTTGATACCGATTATCTGGCCGGTGGTACCAACACTGATG
TGACTGTGGGTGAAGGCCGTCACTTTAGTCTAGCACTGGAAGCTAAGTTCTAA

Upstream 100 bases:

>100_bases
ACCCGTCACCGTAAAGAAGTGTAAAGAAACTTAAATAAAAATAGTTCTCATTTATATTGCGACTCAATTAATACATTCAT
GTGTCATTTTGAGGTTGGAT

Downstream 100 bases:

>100_bases
ATATAGGCTTCAAGTCTAATGAGTATTAAAAGCCTCAACCTTAGGGTTGGGGCTTTTTTGTATCTGTGATTTACTCACTT
AGAGGTTAATGGCTATCAGT

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 710; Mature: 709

Protein sequence:

>710_residues
MSVGTSFKFSRLGLAIVAALASSSAFAEDTSAESTIVAEPNIERISVTGRSFNDYNVGSSSGAMRGDIDILDTPQSVTVI
PDFVTDEQLATNLSEVLVNDSSVTGGSEKWNRQVFNIRGFELSSGSGFLINGQQQWSHYVQPIETLQQVEVLKGPSSMLY
GQSGPGGLINMVTKKPTYETMLDIGFDTDENGSTRFQLDAGGSLNEAETIRYRTVLVKQDTTYWREYQDGSHQERDRWLG
YLNLEFDITDDLLLSLKYDHTQDKTGIDRGGWLDSSGDLIGGRDIIWDQPWAFTDNTISNLGAELTYHLTDDWKVKAGYN
DQQFNRQRLDSSPSLISGSEDPFTDGYYISPFDRYDDWQHKTGFVDFTGNFYTGDLEHQLLIGANMLDYYYGQLKESGEK
KQVVMPGQPVPKPDLDYNRDVTKYESEYKHYGFYVQDLVTITDEWQVLAGVRYDEQKKEGAGSNSYAVSPKFGVIYSPAD
NGSIYVNYSKSFTPQGIVNNIDDVNDGKNLDPEYGEQYEIGTKWELFDGSLLLTGAVFDITVSNVTVTEEIEGSSQTITT
QSGEQRHKGFEMGAQGQVSDSWFMTGSMMYLDAEYLRPETDSLNGKTPVDAPEWSANVWTRYEMTDDLAFNFGALYVGER
FANTSNTISKDGYVRFDMGAAYTMDVMGSDVSVRVNVKNLFDTDYLAGGTNTDVTVGEGRHFSLALEAKF

Sequences:

>Translated_710_residues
MSVGTSFKFSRLGLAIVAALASSSAFAEDTSAESTIVAEPNIERISVTGRSFNDYNVGSSSGAMRGDIDILDTPQSVTVI
PDFVTDEQLATNLSEVLVNDSSVTGGSEKWNRQVFNIRGFELSSGSGFLINGQQQWSHYVQPIETLQQVEVLKGPSSMLY
GQSGPGGLINMVTKKPTYETMLDIGFDTDENGSTRFQLDAGGSLNEAETIRYRTVLVKQDTTYWREYQDGSHQERDRWLG
YLNLEFDITDDLLLSLKYDHTQDKTGIDRGGWLDSSGDLIGGRDIIWDQPWAFTDNTISNLGAELTYHLTDDWKVKAGYN
DQQFNRQRLDSSPSLISGSEDPFTDGYYISPFDRYDDWQHKTGFVDFTGNFYTGDLEHQLLIGANMLDYYYGQLKESGEK
KQVVMPGQPVPKPDLDYNRDVTKYESEYKHYGFYVQDLVTITDEWQVLAGVRYDEQKKEGAGSNSYAVSPKFGVIYSPAD
NGSIYVNYSKSFTPQGIVNNIDDVNDGKNLDPEYGEQYEIGTKWELFDGSLLLTGAVFDITVSNVTVTEEIEGSSQTITT
QSGEQRHKGFEMGAQGQVSDSWFMTGSMMYLDAEYLRPETDSLNGKTPVDAPEWSANVWTRYEMTDDLAFNFGALYVGER
FANTSNTISKDGYVRFDMGAAYTMDVMGSDVSVRVNVKNLFDTDYLAGGTNTDVTVGEGRHFSLALEAKF
>Mature_709_residues
SVGTSFKFSRLGLAIVAALASSSAFAEDTSAESTIVAEPNIERISVTGRSFNDYNVGSSSGAMRGDIDILDTPQSVTVIP
DFVTDEQLATNLSEVLVNDSSVTGGSEKWNRQVFNIRGFELSSGSGFLINGQQQWSHYVQPIETLQQVEVLKGPSSMLYG
QSGPGGLINMVTKKPTYETMLDIGFDTDENGSTRFQLDAGGSLNEAETIRYRTVLVKQDTTYWREYQDGSHQERDRWLGY
LNLEFDITDDLLLSLKYDHTQDKTGIDRGGWLDSSGDLIGGRDIIWDQPWAFTDNTISNLGAELTYHLTDDWKVKAGYND
QQFNRQRLDSSPSLISGSEDPFTDGYYISPFDRYDDWQHKTGFVDFTGNFYTGDLEHQLLIGANMLDYYYGQLKESGEKK
QVVMPGQPVPKPDLDYNRDVTKYESEYKHYGFYVQDLVTITDEWQVLAGVRYDEQKKEGAGSNSYAVSPKFGVIYSPADN
GSIYVNYSKSFTPQGIVNNIDDVNDGKNLDPEYGEQYEIGTKWELFDGSLLLTGAVFDITVSNVTVTEEIEGSSQTITTQ
SGEQRHKGFEMGAQGQVSDSWFMTGSMMYLDAEYLRPETDSLNGKTPVDAPEWSANVWTRYEMTDDLAFNFGALYVGERF
ANTSNTISKDGYVRFDMGAAYTMDVMGSDVSVRVNVKNLFDTDYLAGGTNTDVTVGEGRHFSLALEAKF

Specific function: Specific receptor for the siderophore ferric pseudobactin m114 [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1786344, Length=756, Percent_Identity=27.5132275132275, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1787344, Length=767, Percent_Identity=23.728813559322, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI1787024, Length=398, Percent_Identity=24.3718592964824, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI1790743, Length=654, Percent_Identity=22.4770642201835, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 79189; Mature: 79057

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVGTSFKFSRLGLAIVAALASSSAFAEDTSAESTIVAEPNIERISVTGRSFNDYNVGSS
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCC
SGAMRGDIDILDTPQSVTVIPDFVTDEQLATNLSEVLVNDSSVTGGSEKWNRQVFNIRGF
CCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEECE
ELSSGSGFLINGQQQWSHYVQPIETLQQVEVLKGPSSMLYGQSGPGGLINMVTKKPTYET
EECCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCEEEEEECCCCHHH
MLDIGFDTDENGSTRFQLDAGGSLNEAETIRYRTVLVKQDTTYWREYQDGSHQERDRWLG
HEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCEEE
YLNLEFDITDDLLLSLKYDHTQDKTGIDRGGWLDSSGDLIGGRDIIWDQPWAFTDNTISN
EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCCCCCCHHHH
LGAELTYHLTDDWKVKAGYNDQQFNRQRLDSSPSLISGSEDPFTDGYYISPFDRYDDWQH
CCCEEEEEECCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
KTGFVDFTGNFYTGDLEHQLLIGANMLDYYYGQLKESGEKKQVVMPGQPVPKPDLDYNRD
CCCEEEECCCEEECCCCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
VTKYESEYKHYGFYVQDLVTITDEWQVLAGVRYDEQKKEGAGSNSYAVSPKFGVIYSPAD
HHHHHHHHHHCCEEEEEEEEECCCEEEEECCCCCHHHHCCCCCCCEEECCCCCEEECCCC
NGSIYVNYSKSFTPQGIVNNIDDVNDGKNLDPEYGEQYEIGTKWELFDGSLLLTGAVFDI
CCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCEEEEEEEEEE
TVSNVTVTEEIEGSSQTITTQSGEQRHKGFEMGAQGQVSDSWFMTGSMMYLDAEYLRPET
EECCEEEEEECCCCCCEEEECCCHHHHCCCCCCCCCCCCCCEEEECEEEEEEHHHCCCCC
DSLNGKTPVDAPEWSANVWTRYEMTDDLAFNFGALYVGERFANTSNTISKDGYVRFDMGA
CCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCEEEECHHHCCCCCCCCCCCEEEEECCC
AYTMDVMGSDVSVRVNVKNLFDTDYLAGGTNTDVTVGEGRHFSLALEAKF
EEEEEECCCCEEEEEEEHHHCCCCCCCCCCCCCEEECCCCEEEEEEEECC
>Mature Secondary Structure 
SVGTSFKFSRLGLAIVAALASSSAFAEDTSAESTIVAEPNIERISVTGRSFNDYNVGSS
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCC
SGAMRGDIDILDTPQSVTVIPDFVTDEQLATNLSEVLVNDSSVTGGSEKWNRQVFNIRGF
CCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEECE
ELSSGSGFLINGQQQWSHYVQPIETLQQVEVLKGPSSMLYGQSGPGGLINMVTKKPTYET
EECCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCEEEEEECCCCHHH
MLDIGFDTDENGSTRFQLDAGGSLNEAETIRYRTVLVKQDTTYWREYQDGSHQERDRWLG
HEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCEEE
YLNLEFDITDDLLLSLKYDHTQDKTGIDRGGWLDSSGDLIGGRDIIWDQPWAFTDNTISN
EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCCCCCCHHHH
LGAELTYHLTDDWKVKAGYNDQQFNRQRLDSSPSLISGSEDPFTDGYYISPFDRYDDWQH
CCCEEEEEECCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
KTGFVDFTGNFYTGDLEHQLLIGANMLDYYYGQLKESGEKKQVVMPGQPVPKPDLDYNRD
CCCEEEECCCEEECCCCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
VTKYESEYKHYGFYVQDLVTITDEWQVLAGVRYDEQKKEGAGSNSYAVSPKFGVIYSPAD
HHHHHHHHHHCCEEEEEEEEECCCEEEEECCCCCHHHHCCCCCCCEEECCCCCEEECCCC
NGSIYVNYSKSFTPQGIVNNIDDVNDGKNLDPEYGEQYEIGTKWELFDGSLLLTGAVFDI
CCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCEEEEEEEEEE
TVSNVTVTEEIEGSSQTITTQSGEQRHKGFEMGAQGQVSDSWFMTGSMMYLDAEYLRPET
EECCEEEEEECCCCCCEEEECCCHHHHCCCCCCCCCCCCCCEEEECEEEEEEHHHCCCCC
DSLNGKTPVDAPEWSANVWTRYEMTDDLAFNFGALYVGERFANTSNTISKDGYVRFDMGA
CCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCEEEECHHHCCCCCCCCCCCEEEEECCC
AYTMDVMGSDVSVRVNVKNLFDTDYLAGGTNTDVTVGEGRHFSLALEAKF
EEEEEECCCCEEEEEEEHHHCCCCCCCCCCCCCEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8277948 [H]