Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is 167623808
Identifier: 167623808
GI number: 167623808
Start: 2253938
End: 2255041
Strand: Direct
Name: 167623808
Synonym: Shal_1878
Alternate gene names: NA
Gene position: 2253938-2255041 (Clockwise)
Preceding gene: 167623807
Following gene: 167623809
Centisome position: 43.12
GC content: 37.14
Gene sequence:
>1104_bases ATGTATATGTTGGCTGATATTGATGATAAAAAAATTACTGCTTTCAGAGATTTAGTTAATGATAACAATCGATTCGTCTT GAAAGCGTACGCAAACAAGCAAGGAAAAAATCAATGGAACCTTATATGCTCTAGTATGGACTGGATTTCTGTAGCTGTTC GAAATTTACATAGCTTTCCAGCCTTAGACTCCAATATTGATATTAGAGTCATGCAAATTTATTCTTTAATAAGCTCTATT GATATTGTTAATGAGGCGGTGATGCAGCTGCATCGTGTTTTTTTTGGTCATTTCACTGAACTTCTGCCGTTTAAAGGAGA AAAACTCATCTTCAACGAACGGATCTTCGATAAAGACGATAGTGATTATTTCAAAGAAGTCCGAGCATGTTTTGGGGCGC ATCCAGTAAACCTCAATGGAGAAGGAAAAGAGAAACGATTTGCAAGTTGGCCTTATGAAGGGTTTACAAAAAGCAGCAAT GACCTTGAGGTTAGACTTTATAGTAACGATCCCAATAAGGACGACATCGTGCTTGGATTAAACATCAAGGAACTTGTTGC CTTTCTTCAATCGCGTTATGAATACCTTGACAACATTTCGTTGGAAATCGAAAGACAATATGAATTTTGCAAACAGGAGC TTGCGCTGACCCCTATTGCTTACTGTAGAGATATGCGTGAATCCATAGATATTTTACTGAAGGAAAATGAATCAAGATTT AATAATGACTATTATCGGAGCACTCTAGAAGAGTTGGCTTTATTGCTAAGCACTCATCTTAGTGAAGCCGAGTTAGCAGA AGAAGTGTTGAAGTTTAAGAATAGCCTAGAGCCTCTCATAGAAGAATTACGGCAAAACTTACAAGAGGTAAATATTGTGG ACTTACACCACGATGATTTGCTAAATCCAACATCCAACATCCAACATCTAGCATCGAAAGCACTCTCAATTATGAACTAC CTAAGTTCTACTCATGCGTGCTTAGACAACGCCGTTATGAAGATCCACTGTTTGAATTCTATCTTAAACGTATCAATGAA GTATCGTTCAATAAGTATCAACTTAAGGTGTCAGACAGTGATGGGCAACTATTGCTTAAATTGA
Upstream 100 bases:
>100_bases GTTATCCAACTAGATAAACAGTCGGATAGCTAGTTATTTTTTACACACTGAACATAATGAACAGCAAAATGAAATTCACC TCGCTGTACTTGTGATAGGA
Downstream 100 bases:
>100_bases AACTCATTATGGATAGCATATCATAAGTGAATGCCATCACTGCTTTTAAGTCATGCCGTAAATCACATAAGGATATAGTA TGAAAGATACCATTAAATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MYMLADIDDKKITAFRDLVNDNNRFVLKAYANKQGKNQWNLICSSMDWISVAVRNLHSFPALDSNIDIRVMQIYSLISSI DIVNEAVMQLHRVFFGHFTELLPFKGEKLIFNERIFDKDDSDYFKEVRACFGAHPVNLNGEGKEKRFASWPYEGFTKSSN DLEVRLYSNDPNKDDIVLGLNIKELVAFLQSRYEYLDNISLEIERQYEFCKQELALTPIAYCRDMRESIDILLKENESRF NNDYYRSTLEELALLLSTHLSEAELAEEVLKFKNSLEPLIEELRQNLQEVNIVDLHHDDLLNPTSNIQHLASKALSIMNY LSSTHACLDNAVMKIHCLNSILNVSMKYRSISINLRCQTVMGNYCLN
Sequences:
>Translated_367_residues MYMLADIDDKKITAFRDLVNDNNRFVLKAYANKQGKNQWNLICSSMDWISVAVRNLHSFPALDSNIDIRVMQIYSLISSI DIVNEAVMQLHRVFFGHFTELLPFKGEKLIFNERIFDKDDSDYFKEVRACFGAHPVNLNGEGKEKRFASWPYEGFTKSSN DLEVRLYSNDPNKDDIVLGLNIKELVAFLQSRYEYLDNISLEIERQYEFCKQELALTPIAYCRDMRESIDILLKENESRF NNDYYRSTLEELALLLSTHLSEAELAEEVLKFKNSLEPLIEELRQNLQEVNIVDLHHDDLLNPTSNIQHLASKALSIMNY LSSTHACLDNAVMKIHCLNSILNVSMKYRSISINLRCQTVMGNYCLN >Mature_367_residues MYMLADIDDKKITAFRDLVNDNNRFVLKAYANKQGKNQWNLICSSMDWISVAVRNLHSFPALDSNIDIRVMQIYSLISSI DIVNEAVMQLHRVFFGHFTELLPFKGEKLIFNERIFDKDDSDYFKEVRACFGAHPVNLNGEGKEKRFASWPYEGFTKSSN DLEVRLYSNDPNKDDIVLGLNIKELVAFLQSRYEYLDNISLEIERQYEFCKQELALTPIAYCRDMRESIDILLKENESRF NNDYYRSTLEELALLLSTHLSEAELAEEVLKFKNSLEPLIEELRQNLQEVNIVDLHHDDLLNPTSNIQHLASKALSIMNY LSSTHACLDNAVMKIHCLNSILNVSMKYRSISINLRCQTVMGNYCLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42583; Mature: 42583
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMLADIDDKKITAFRDLVNDNNRFVLKAYANKQGKNQWNLICSSMDWISVAVRNLHSFP CEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCC ALDSNIDIRVMQIYSLISSIDIVNEAVMQLHRVFFGHFTELLPFKGEKLIFNERIFDKDD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC SDYFKEVRACFGAHPVNLNGEGKEKRFASWPYEGFTKSSNDLEVRLYSNDPNKDDIVLGL HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECC NIKELVAFLQSRYEYLDNISLEIERQYEFCKQELALTPIAYCRDMRESIDILLKENESRF CHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC NNDYYRSTLEELALLLSTHLSEAELAEEVLKFKNSLEPLIEELRQNLQEVNIVDLHHDDL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC LNPTSNIQHLASKALSIMNYLSSTHACLDNAVMKIHCLNSILNVSMKYRSISINLRCQTV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE MGNYCLN CCCCCCC >Mature Secondary Structure MYMLADIDDKKITAFRDLVNDNNRFVLKAYANKQGKNQWNLICSSMDWISVAVRNLHSFP CEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCC ALDSNIDIRVMQIYSLISSIDIVNEAVMQLHRVFFGHFTELLPFKGEKLIFNERIFDKDD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC SDYFKEVRACFGAHPVNLNGEGKEKRFASWPYEGFTKSSNDLEVRLYSNDPNKDDIVLGL HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECC NIKELVAFLQSRYEYLDNISLEIERQYEFCKQELALTPIAYCRDMRESIDILLKENESRF CHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC NNDYYRSTLEELALLLSTHLSEAELAEEVLKFKNSLEPLIEELRQNLQEVNIVDLHHDDL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC LNPTSNIQHLASKALSIMNYLSSTHACLDNAVMKIHCLNSILNVSMKYRSISINLRCQTV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE MGNYCLN CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA