Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
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Accession | NC_010334 |
Length | 5,226,917 |
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The map label for this gene is gltP [H]
Identifier: 167623572
GI number: 167623572
Start: 1969558
End: 1970820
Strand: Direct
Name: gltP [H]
Synonym: Shal_1641
Alternate gene names: 167623572
Gene position: 1969558-1970820 (Clockwise)
Preceding gene: 167623568
Following gene: 167623575
Centisome position: 37.68
GC content: 46.95
Gene sequence:
>1263_bases GTGTTGAACAAAAAGAAAAAGTTTTATAAGAATATCGGATTCCAAGTAGTTGTAGCTATGGTCCTAGGTGCGATCGTGGG TATGATGATGGGAGAAGATGCCTCTATCTTCGCTCCGCTAGGAACATTTTTTATCCATTTGATTAAAATGTTGGTGATCC CTCTAGTCGCAGTTTCAATTATTGCGGGCGCAGCAAGCTTAGGCGCTGGTCCATCGGCAGGTAAAGTCGGTATTGGCACT ATCAGTTTCTTCATGGCGACCTCTGCTTTGGCTGTGACTTTAGCGCTTGTTATGGGTGAGTTCTTCCAGCCAGGTGTTGG CATGGACTTCTCACAGCATACTGCGGGTCTCGCTGCGGTAACCGCTGAGCAGGGCGCACTACCTGGTGTGGCTGATACCA TTATCGGTATGATCCCAACGAACGTGTTCGAGGCGCTAACTGGCGGTAACATTCTGCAAATTTTGGTGTTCTGTATCTTC TTCGGTATCGCACTGACTAAAGTTAATCCAGAGAGTGCTAAGCCGATTACTTCTGCACTGAATACTATCGTTGAAGCCTT TATTTGGATGATTAACATCGTGATGTTGATTGCCCCGATTGGTGTGTTTGGCTTGATGGCTGACTCTGTAGGTACCTTTG GCTTCCAGTCATTGACTGTGGTGTTGAACCTATTCCTAGTTTATGTCGCAGCTATCTTAATCTATGGCTTTATCTTCTTC CCATTGATGGTGAAGTTCTTCTCTAACGTTCCGGTTGGCAAGTTCCTATCGGCGATGAAGAAGCCGCAAGCATTGGCTAT GTCTACCGCTTCATCGATGGCTGCGCTGCCAGTTAACATCGAAGTGTGTGAGAAAGAGCTAGGCGTATCTAAGTCGACAG CCGCGTTTGTATTGCCTTTAGGCGCTACCATTAACATGAGTGGTAACGCGATCTACTACGGTCTAGTAGCGGTATTCTTC GCTCAGATGTTCAATGTAGAGCTAGGCCTTGCAGCTTACGTTGCAATCATATTCACCTCGACATTGGGCGCGATTGGCCA AGCGGGTGTTCCAGGTCCATCATTCCTAGTGATTGCGGTATTAGTTGCTGCTGGTATTCCAATTGAAGGCCTACCACTAC TGTTCGCTCTGGACCGTGTGTTTGACATGATCAGAACAACGCTAAACATTACGGGTGATGCGGTTTGTGCTGTGGTTATC GATAAGTTTAACCCAGAAACTGAAATCCCAGTGCCAGCTGAGCAGGCTAACGCCAATAGTTAA
Upstream 100 bases:
>100_bases GTGAATCACATTAATAACCTACACTGGGTGTTATCGTACTTCAAAGAATTAAAGTGGTACTCGTACTACTTAAAAAATAT AAGTCTGTGATGGAGCTAGG
Downstream 100 bases:
>100_bases GCCTATTTAGCTAACGTCAGTCGTTAATGCTTAGCCGTTAACTGCTAAGTTAACAATAGAAAGCCCTCTTTATAGAGGGC TTTTTCGTATTTAAAGGCTA
Product: sodium:dicarboxylate symporter
Products: L-aspartate [Cytoplasm]; Proton [Cytoplasm]; L-glutamate [Cytoplasm] [C]
Alternate protein names: Glutamate-aspartate carrier protein [H]
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MLNKKKKFYKNIGFQVVVAMVLGAIVGMMMGEDASIFAPLGTFFIHLIKMLVIPLVAVSIIAGAASLGAGPSAGKVGIGT ISFFMATSALAVTLALVMGEFFQPGVGMDFSQHTAGLAAVTAEQGALPGVADTIIGMIPTNVFEALTGGNILQILVFCIF FGIALTKVNPESAKPITSALNTIVEAFIWMINIVMLIAPIGVFGLMADSVGTFGFQSLTVVLNLFLVYVAAILIYGFIFF PLMVKFFSNVPVGKFLSAMKKPQALAMSTASSMAALPVNIEVCEKELGVSKSTAAFVLPLGATINMSGNAIYYGLVAVFF AQMFNVELGLAAYVAIIFTSTLGAIGQAGVPGPSFLVIAVLVAAGIPIEGLPLLFALDRVFDMIRTTLNITGDAVCAVVI DKFNPETEIPVPAEQANANS
Sequences:
>Translated_420_residues MLNKKKKFYKNIGFQVVVAMVLGAIVGMMMGEDASIFAPLGTFFIHLIKMLVIPLVAVSIIAGAASLGAGPSAGKVGIGT ISFFMATSALAVTLALVMGEFFQPGVGMDFSQHTAGLAAVTAEQGALPGVADTIIGMIPTNVFEALTGGNILQILVFCIF FGIALTKVNPESAKPITSALNTIVEAFIWMINIVMLIAPIGVFGLMADSVGTFGFQSLTVVLNLFLVYVAAILIYGFIFF PLMVKFFSNVPVGKFLSAMKKPQALAMSTASSMAALPVNIEVCEKELGVSKSTAAFVLPLGATINMSGNAIYYGLVAVFF AQMFNVELGLAAYVAIIFTSTLGAIGQAGVPGPSFLVIAVLVAAGIPIEGLPLLFALDRVFDMIRTTLNITGDAVCAVVI DKFNPETEIPVPAEQANANS >Mature_420_residues MLNKKKKFYKNIGFQVVVAMVLGAIVGMMMGEDASIFAPLGTFFIHLIKMLVIPLVAVSIIAGAASLGAGPSAGKVGIGT ISFFMATSALAVTLALVMGEFFQPGVGMDFSQHTAGLAAVTAEQGALPGVADTIIGMIPTNVFEALTGGNILQILVFCIF FGIALTKVNPESAKPITSALNTIVEAFIWMINIVMLIAPIGVFGLMADSVGTFGFQSLTVVLNLFLVYVAAILIYGFIFF PLMVKFFSNVPVGKFLSAMKKPQALAMSTASSMAALPVNIEVCEKELGVSKSTAAFVLPLGATINMSGNAIYYGLVAVFF AQMFNVELGLAAYVAIIFTSTLGAIGQAGVPGPSFLVIAVLVAAGIPIEGLPLLFALDRVFDMIRTTLNITGDAVCAVVI DKFNPETEIPVPAEQANANS
Specific function: This carrier protein is part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system [H]
COG id: COG1301
COG function: function code C; Na+/H+-dicarboxylate symporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]
Homologues:
Organism=Homo sapiens, GI169790839, Length=465, Percent_Identity=26.8817204301075, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI66773030, Length=465, Percent_Identity=28.3870967741935, Blast_Score=152, Evalue=7e-37, Organism=Homo sapiens, GI4827012, Length=461, Percent_Identity=26.6811279826464, Blast_Score=150, Evalue=1e-36, Organism=Homo sapiens, GI21314632, Length=408, Percent_Identity=29.4117647058824, Blast_Score=150, Evalue=2e-36, Organism=Homo sapiens, GI5032093, Length=421, Percent_Identity=28.978622327791, Blast_Score=145, Evalue=7e-35, Organism=Homo sapiens, GI223468566, Length=298, Percent_Identity=30.2013422818792, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI40254478, Length=455, Percent_Identity=26.8131868131868, Blast_Score=136, Evalue=4e-32, Organism=Homo sapiens, GI223468564, Length=292, Percent_Identity=30.4794520547945, Blast_Score=136, Evalue=4e-32, Organism=Homo sapiens, GI194239697, Length=261, Percent_Identity=30.6513409961686, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI262359914, Length=382, Percent_Identity=26.4397905759162, Blast_Score=115, Evalue=7e-26, Organism=Homo sapiens, GI301601644, Length=152, Percent_Identity=36.8421052631579, Blast_Score=104, Evalue=2e-22, Organism=Escherichia coli, GI1790514, Length=415, Percent_Identity=33.2530120481928, Blast_Score=227, Evalue=9e-61, Organism=Escherichia coli, GI1789947, Length=408, Percent_Identity=29.656862745098, Blast_Score=192, Evalue=4e-50, Organism=Escherichia coli, GI1789473, Length=378, Percent_Identity=28.042328042328, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788024, Length=454, Percent_Identity=25.9911894273128, Blast_Score=104, Evalue=8e-24, Organism=Caenorhabditis elegans, GI71996953, Length=432, Percent_Identity=28.2407407407407, Blast_Score=162, Evalue=2e-40, Organism=Caenorhabditis elegans, GI193206654, Length=416, Percent_Identity=31.0096153846154, Blast_Score=161, Evalue=6e-40, Organism=Caenorhabditis elegans, GI71983099, Length=451, Percent_Identity=27.9379157427938, Blast_Score=157, Evalue=1e-38, Organism=Caenorhabditis elegans, GI71983106, Length=451, Percent_Identity=27.9379157427938, Blast_Score=156, Evalue=2e-38, Organism=Caenorhabditis elegans, GI193206505, Length=405, Percent_Identity=28.641975308642, Blast_Score=156, Evalue=2e-38, Organism=Caenorhabditis elegans, GI17537407, Length=437, Percent_Identity=27.9176201372998, Blast_Score=152, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17541374, Length=419, Percent_Identity=27.9236276849642, Blast_Score=141, Evalue=5e-34, Organism=Drosophila melanogaster, GI24583025, Length=409, Percent_Identity=24.2053789731051, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI17137668, Length=409, Percent_Identity=24.2053789731051, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24583023, Length=409, Percent_Identity=24.2053789731051, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI281360483, Length=476, Percent_Identity=24.5798319327731, Blast_Score=109, Evalue=4e-24, Organism=Drosophila melanogaster, GI17137666, Length=476, Percent_Identity=24.5798319327731, Blast_Score=109, Evalue=4e-24, Organism=Drosophila melanogaster, GI281360481, Length=476, Percent_Identity=24.5798319327731, Blast_Score=108, Evalue=5e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018107 [H]
Pfam domain/function: PF00375 SDF [H]
EC number: NA
Molecular weight: Translated: 43863; Mature: 43863
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNKKKKFYKNIGFQVVVAMVLGAIVGMMMGEDASIFAPLGTFFIHLIKMLVIPLVAVSI CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH IAGAASLGAGPSAGKVGIGTISFFMATSALAVTLALVMGEFFQPGVGMDFSQHTAGLAAV HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHEE TAEQGALPGVADTIIGMIPTNVFEALTGGNILQILVFCIFFGIALTKVNPESAKPITSAL EHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH NTIVEAFIWMINIVMLIAPIGVFGLMADSVGTFGFQSLTVVLNLFLVYVAAILIYGFIFF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLMVKFFSNVPVGKFLSAMKKPQALAMSTASSMAALPVNIEVCEKELGVSKSTAAFVLPL HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEC GATINMSGNAIYYGLVAVFFAQMFNVELGLAAYVAIIFTSTLGAIGQAGVPGPSFLVIAV CCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LVAAGIPIEGLPLLFALDRVFDMIRTTLNITGDAVCAVVIDKFNPETEIPVPAEQANANS HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCC >Mature Secondary Structure MLNKKKKFYKNIGFQVVVAMVLGAIVGMMMGEDASIFAPLGTFFIHLIKMLVIPLVAVSI CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH IAGAASLGAGPSAGKVGIGTISFFMATSALAVTLALVMGEFFQPGVGMDFSQHTAGLAAV HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHEE TAEQGALPGVADTIIGMIPTNVFEALTGGNILQILVFCIFFGIALTKVNPESAKPITSAL EHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH NTIVEAFIWMINIVMLIAPIGVFGLMADSVGTFGFQSLTVVLNLFLVYVAAILIYGFIFF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLMVKFFSNVPVGKFLSAMKKPQALAMSTASSMAALPVNIEVCEKELGVSKSTAAFVLPL HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEC GATINMSGNAIYYGLVAVFFAQMFNVELGLAAYVAIIFTSTLGAIGQAGVPGPSFLVIAV CCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LVAAGIPIEGLPLLFALDRVFDMIRTTLNITGDAVCAVVIDKFNPETEIPVPAEQANANS HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-aspartate [Periplasm]; Proton [Periplasm]; L-glutamate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-aspartate [Periplasm] = Proton [Cytoplasm] + L-aspartate [Cytoplasm] Proton [Periplasm] + L-glutamate [Periplasm] = Proton [Cytoplasm] + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1971622; 1551855; 8265357; 9278503 [H]