Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167623550

Identifier: 167623550

GI number: 167623550

Start: 1944940

End: 1945854

Strand: Direct

Name: 167623550

Synonym: Shal_1619

Alternate gene names: NA

Gene position: 1944940-1945854 (Clockwise)

Preceding gene: 167623548

Following gene: 167623551

Centisome position: 37.21

GC content: 46.34

Gene sequence:

>915_bases
ATGGAGCAGCAAGCATATTCAATTGGTGTGAAAGGCAAAAAGTGGGGCGATGCAGAAAAAGCGCAGTGGTTTAATGCTCA
GTCGATTAAGCGCTCTTACCAAGATGAAGTCGTGAGTAAAATTCTAGCCCTTAAAGACCGCTTTGACGTCGAGCAATACG
GCGCGCTTTCATACGATGCTAAGCGTTATCCTTTATTTGCGGTGAAGACGCATAACTGGGATGCAAACAAAGCCACTATT
TTAGTGACAGGTGGCGTGCATGGCTATGAAACCAGTGGTGTTCAAGGCGCCATTCGCTTTATTGAGACTCAAGCCGCAAA
TTACAGCGATAAGTTCAATATTTTAGTCACACCTTGTATTAGCCCTTGGGGCTATGAAACCATTAACCGCTGGAATCCAA
AGGCTATTGACCCTAACCGCTCTTTCTATGCTGATAGCTCGGCAGAAGAGTCTGCAGCGTTAATCAAGCTGTTAGCGGAG
CTGGGTGTCGAGATGTTTGCCCATATCGACTTACATGAAACCACCGATACCGATAACAGTGAATTTAGACCTGCATTGGC
AGCGCGTGACGCGGTAGAGCACACTAACTGGAATATACCAGATGGATTTTACTTAGTTGGCGATACCATCAATCCGCAAG
ATGAATTTCAAACGGCAATGATTAAATCGGTAGAGCAGGTGACACATATTGCTCCAGCTGATGATAGCGGTAAGTTAATT
GGTGTGGACTTGGCCCAGTTCGGGGTAATTAACTACGCCACTAAGGCACTTGGCCTATGTGCTGGGGTGACAGACGCTAA
ATATGTGACGACCACAGAAGTCTATCCTGATAGCCCATTATCAGATGATGAAAACTGCATTGTAGCGCAAGTGGCGGCGA
TAACGGGTGGACTGGATTACTTGCTAACGCTGTAG

Upstream 100 bases:

>100_bases
CGAGCAATTTAATCTCGCCTGTTTAGCGATAAGGTTAGATGGCATTTGGTAATTAGTTATAGAAGAGCTTGGAGCGAAAA
CCAAGCCAAAAGGAAGAATA

Downstream 100 bases:

>100_bases
TCACTACTCTTTGAGCTATTCACTGAAGTGAGCAGCTTTGATACAAAGGCCTCGTCATTTAGATGAGGCTTTTTTATGAC
TTTTTTTATGATTATTTCTA

Product: zinc carboxypeptidase-like protein

Products: NA

Alternate protein names: Zn-Dependent Deacylase/Carboxypeptidase Superfamily; Deacylase; Deacylase/Carboxypeptidase Superfamily Protein; Peptidase; Fusion Protein

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDAKRYPLFAVKTHNWDANKATI
LVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCISPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAE
LGVEMFAHIDLHETTDTDNSEFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI
GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDYLLTL

Sequences:

>Translated_304_residues
MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDAKRYPLFAVKTHNWDANKATI
LVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCISPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAE
LGVEMFAHIDLHETTDTDNSEFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI
GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDYLLTL
>Mature_304_residues
MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDAKRYPLFAVKTHNWDANKATI
LVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCISPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAE
LGVEMFAHIDLHETTDTDNSEFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI
GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDYLLTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33478; Mature: 33478

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDA
CCCCCEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
KRYPLFAVKTHNWDANKATILVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCI
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECC
SPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAELGVEMFAHIDLHETTDTDNS
CCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
EFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI
CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDY
EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHCCHHE
LLTL
EEEC
>Mature Secondary Structure
MEQQAYSIGVKGKKWGDAEKAQWFNAQSIKRSYQDEVVSKILALKDRFDVEQYGALSYDA
CCCCCEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
KRYPLFAVKTHNWDANKATILVTGGVHGYETSGVQGAIRFIETQAANYSDKFNILVTPCI
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECC
SPWGYETINRWNPKAIDPNRSFYADSSAEESAALIKLLAELGVEMFAHIDLHETTDTDNS
CCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
EFRPALAARDAVEHTNWNIPDGFYLVGDTINPQDEFQTAMIKSVEQVTHIAPADDSGKLI
CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
GVDLAQFGVINYATKALGLCAGVTDAKYVTTTEVYPDSPLSDDENCIVAQVAAITGGLDY
EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHCCHHE
LLTL
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA