| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is cpxA [H]
Identifier: 167622278
GI number: 167622278
Start: 401249
End: 402619
Strand: Reverse
Name: cpxA [H]
Synonym: Shal_0337
Alternate gene names: 167622278
Gene position: 402619-401249 (Counterclockwise)
Preceding gene: 167622279
Following gene: 167622276
Centisome position: 7.7
GC content: 46.1
Gene sequence:
>1371_bases ATGCAGCTGAGAAAAAATCCCAACAATATATTCGTTAAACTGCTACTGGGCTTCTGGCTCTGTAGCTCGCTGATTATTAC CCTGGTAGGCTTACTTCCTCTGCTGCAGCAAAATCACGATCAATCTGAACTGCCACCCCAGCTTAAACATCTGCTTGAAA CAGTATCGCAAAAAATTATCAATAATCCCCAAGTGTTAAATAACGATAAAATGAAGCGCTGGGATCGGTTTAAGGAGTTT AACGGTCGACCGATACGGATTTACCTGGTCGATGAGAATGCTAACGTACTCAATACTCACAAACCCTCTCGGACATTGCG TCGCTTTATGTTGATCGCCGATGAAGCTGGCAAACCGATAAAACAACAGTTTAGAAATGAACTCATGTTTGGTCCCTATA GCTTCCACGTTGAAGGTAAAGAGTACAGCTTGTATGGCCGTATTCCAGAGCATCATTCACGGCCCTGGTTCTTCTTTTTT AGCGATAATAAGATCTTAACCCTCAGTATCGCAATTTTACTATCAGGCCTCTTATGTGGCTTATTTGCTTGGCATTTAGG TAAGCCGTTGCGCTCACTTAAACGCAGCGCCGACGCACTCGCCGGTGGTGATTTAAGTAGCCGAGTCGATATGGCAACCG CCCTGCGAAACGATGAAATTGGCCAGCTAGCCCAAGCCTTTAATAGTATGGCTGACTCGGTAGAAGATATGGTCAATAGC CAACAAAGACTGATCAGCGATATCTCTCATGAGCTACGAACGCCACTGACAAGACTGAAACTGTCTTTGGCACTCAGTCG TAAAAAGGGTCAAGAAACAGCTGAAACTGAACGTATTGAGTATGAAGCCGACCAACTTGAGCAGATGATTGCCGAGCTGT TAGAGCTGTCTAGAGTCAAGCTCAATGCTAACGAGACCAAGCGCAACCTCGAGCTTTCCGAAACCTTAAGCCAAGTCTTA GACGATGCCGATTTCGAGGCTCAGCAGCAACAAAAACAGCTGCATATCGACATTGATGAATCGATTGTTGCACCGCTATA TCCACGACCTTTATGCCGCGCAGTTGAAAACTTGCTTCGCAATGCGATCCGCTATGCCAACAGCCAAGTCTCAATTCAAG CCATAGCCACTGCAAGCAATATACAAATTGAGATTATTGATGATGGCCCAGGGATCGCCGACGAGACCGACTTAGAGGCG ATTTTCGAACCTTTCTACCGCCCACAATCGGCACGAGATAGAGAGTCCGGCGGCTGGGGCTTAGGTCTCGCGATAGCCAG AGCCGCAATTCAGGCCCATCAAGGCAAGATAACGGCTGAAAATAATCAACATAGTGGTTTAAAAATCACCATCAACTTGC CTATCCAATAA
Upstream 100 bases:
>100_bases CATGCACCTTTCTAATTTACGCAAGAAAATGCCTGAACGCGATGACGGCCGCCCACGAGTAAAGACGATTCGTGGCAAAG GCTACATCTGGTTACCCTAA
Downstream 100 bases:
>100_bases ATACCATCACTCAACTACGCGGCGTTTGCCGCGGGTTCGAGTCTGGCAAGCCAGTGTGCGTAATCTGCCTGCTTAGGAAT ACGTTTATCTGAATGCCCCA
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MQLRKNPNNIFVKLLLGFWLCSSLIITLVGLLPLLQQNHDQSELPPQLKHLLETVSQKIINNPQVLNNDKMKRWDRFKEF NGRPIRIYLVDENANVLNTHKPSRTLRRFMLIADEAGKPIKQQFRNELMFGPYSFHVEGKEYSLYGRIPEHHSRPWFFFF SDNKILTLSIAILLSGLLCGLFAWHLGKPLRSLKRSADALAGGDLSSRVDMATALRNDEIGQLAQAFNSMADSVEDMVNS QQRLISDISHELRTPLTRLKLSLALSRKKGQETAETERIEYEADQLEQMIAELLELSRVKLNANETKRNLELSETLSQVL DDADFEAQQQQKQLHIDIDESIVAPLYPRPLCRAVENLLRNAIRYANSQVSIQAIATASNIQIEIIDDGPGIADETDLEA IFEPFYRPQSARDRESGGWGLGLAIARAAIQAHQGKITAENNQHSGLKITINLPIQ
Sequences:
>Translated_456_residues MQLRKNPNNIFVKLLLGFWLCSSLIITLVGLLPLLQQNHDQSELPPQLKHLLETVSQKIINNPQVLNNDKMKRWDRFKEF NGRPIRIYLVDENANVLNTHKPSRTLRRFMLIADEAGKPIKQQFRNELMFGPYSFHVEGKEYSLYGRIPEHHSRPWFFFF SDNKILTLSIAILLSGLLCGLFAWHLGKPLRSLKRSADALAGGDLSSRVDMATALRNDEIGQLAQAFNSMADSVEDMVNS QQRLISDISHELRTPLTRLKLSLALSRKKGQETAETERIEYEADQLEQMIAELLELSRVKLNANETKRNLELSETLSQVL DDADFEAQQQQKQLHIDIDESIVAPLYPRPLCRAVENLLRNAIRYANSQVSIQAIATASNIQIEIIDDGPGIADETDLEA IFEPFYRPQSARDRESGGWGLGLAIARAAIQAHQGKITAENNQHSGLKITINLPIQ >Mature_456_residues MQLRKNPNNIFVKLLLGFWLCSSLIITLVGLLPLLQQNHDQSELPPQLKHLLETVSQKIINNPQVLNNDKMKRWDRFKEF NGRPIRIYLVDENANVLNTHKPSRTLRRFMLIADEAGKPIKQQFRNELMFGPYSFHVEGKEYSLYGRIPEHHSRPWFFFF SDNKILTLSIAILLSGLLCGLFAWHLGKPLRSLKRSADALAGGDLSSRVDMATALRNDEIGQLAQAFNSMADSVEDMVNS QQRLISDISHELRTPLTRLKLSLALSRKKGQETAETERIEYEADQLEQMIAELLELSRVKLNANETKRNLELSETLSQVL DDADFEAQQQQKQLHIDIDESIVAPLYPRPLCRAVENLLRNAIRYANSQVSIQAIATASNIQIEIIDDGPGIADETDLEA IFEPFYRPQSARDRESGGWGLGLAIARAAIQAHQGKITAENNQHSGLKITINLPIQ
Specific function: This protein is involved in several diverse cellular processes, such as the functioning of acetohydroxyacid synthetase I, in the biosynthesis of isoleucine and valine, the TraJ protein activation activity for tra gene expression in F plasmid, and the synt
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1790346, Length=374, Percent_Identity=39.8395721925134, Blast_Score=224, Evalue=7e-60, Organism=Escherichia coli, GI1787894, Length=331, Percent_Identity=32.6283987915408, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1788393, Length=273, Percent_Identity=32.967032967033, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1786783, Length=331, Percent_Identity=30.8157099697885, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1789808, Length=290, Percent_Identity=28.2758620689655, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1786912, Length=240, Percent_Identity=31.25, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI87082128, Length=295, Percent_Identity=24.0677966101695, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1788279, Length=302, Percent_Identity=26.158940397351, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI1790861, Length=299, Percent_Identity=24.4147157190635, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI145693157, Length=260, Percent_Identity=25, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1790436, Length=226, Percent_Identity=26.5486725663717, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789403, Length=351, Percent_Identity=25.3561253561254, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787374, Length=300, Percent_Identity=24.3333333333333, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1790551, Length=278, Percent_Identity=24.1007194244604, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1789149, Length=351, Percent_Identity=24.5014245014245, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788549, Length=226, Percent_Identity=29.2035398230088, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 51686; Mature: 51686
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLRKNPNNIFVKLLLGFWLCSSLIITLVGLLPLLQQNHDQSELPPQLKHLLETVSQKII CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC NNPQVLNNDKMKRWDRFKEFNGRPIRIYLVDENANVLNTHKPSRTLRRFMLIADEAGKPI CCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHH KQQFRNELMFGPYSFHVEGKEYSLYGRIPEHHSRPWFFFFSDNKILTLSIAILLSGLLCG HHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCEEEEEECCEEEEHHHHHHHHHHHHH LFAWHLGKPLRSLKRSADALAGGDLSSRVDMATALRNDEIGQLAQAFNSMADSVEDMVNS HHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QQRLISDISHELRTPLTRLKLSLALSRKKGQETAETERIEYEADQLEQMIAELLELSRVK HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC LNANETKRNLELSETLSQVLDDADFEAQQQQKQLHIDIDESIVAPLYPRPLCRAVENLLR CCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHEEECCCHHHHCCCCCCHHHHHHHHHHH NAIRYANSQVSIQAIATASNIQIEIIDDGPGIADETDLEAIFEPFYRPQSARDRESGGWG HHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCH LGLAIARAAIQAHQGKITAENNQHSGLKITINLPIQ HHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCC >Mature Secondary Structure MQLRKNPNNIFVKLLLGFWLCSSLIITLVGLLPLLQQNHDQSELPPQLKHLLETVSQKII CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC NNPQVLNNDKMKRWDRFKEFNGRPIRIYLVDENANVLNTHKPSRTLRRFMLIADEAGKPI CCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHH KQQFRNELMFGPYSFHVEGKEYSLYGRIPEHHSRPWFFFFSDNKILTLSIAILLSGLLCG HHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCEEEEEECCEEEEHHHHHHHHHHHHH LFAWHLGKPLRSLKRSADALAGGDLSSRVDMATALRNDEIGQLAQAFNSMADSVEDMVNS HHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QQRLISDISHELRTPLTRLKLSLALSRKKGQETAETERIEYEADQLEQMIAELLELSRVK HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC LNANETKRNLELSETLSQVLDDADFEAQQQQKQLHIDIDESIVAPLYPRPLCRAVENLLR CCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHEEECCCHHHHCCCCCCHHHHHHHHHHH NAIRYANSQVSIQAIATASNIQIEIIDDGPGIADETDLEAIFEPFYRPQSARDRESGGWG HHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCH LGLAIARAAIQAHQGKITAENNQHSGLKITINLPIQ HHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]