| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622184
Identifier: 167622184
GI number: 167622184
Start: 292389
End: 292883
Strand: Reverse
Name: 167622184
Synonym: Shal_0243
Alternate gene names: NA
Gene position: 292883-292389 (Counterclockwise)
Preceding gene: 167622185
Following gene: 167622181
Centisome position: 5.6
GC content: 50.51
Gene sequence:
>495_bases ATGTTAGTGGTGACCAACTATCCCAACGTGCCGATTGCAACATCTAATGCTGCAACCGATTCTGCGCGCACGGATAGTCA GCAGCGCCCACCCATTATTCCGCCGCAACAAGCCACCAAAGGCCATGAAGAACGCGCCTTTAACCCGCAGCATGAACGTA CTGCAGACCATGCACAAAACCAAGCTAAGCTTCGCGAGTCGGTGCAACAAAAGCAGCAAGGCCAATCTCAGCAGCAAGAG CAATCTGGTCAAGAAAAACAGAAACAAGCAGCCAACTTAAATTTAAAGCAGCTGCTTAGCCAGCGGGCGCCACTCAAGCG CAGCGATATTAAACTGCCTGGGCAACAGCCACCGCCAACCGATACAAGCCCAACCAACCAAGCGATGCCTAACGAGACAT TACAGTTTTACCAAGCCTTTGGTGTGCGTATTGAAGCCTTTTACCATCAACGAACCGAACCCGATACTCAGCCAAACCTT TTAGAAACGGCATAA
Upstream 100 bases:
>100_bases GAGAAATCGATACCAAGCGTTAAGGTGAGTCTGACCATGGCGCTTTATTTTTACGCTGAATTAGGTTAAGATTTAACCAC ACTTTTCAGCGGGAAATATT
Downstream 100 bases:
>100_bases AAAAACCGACAAACTCAGTTGTCGGTTTTTTTGTGTCTCGCTTAAACGATTACTTCTTCAATTTCGCGAAGGCATCGGCA AAAGCGTTACCCATGGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MLVVTNYPNVPIATSNAATDSARTDSQQRPPIIPPQQATKGHEERAFNPQHERTADHAQNQAKLRESVQQKQQGQSQQQE QSGQEKQKQAANLNLKQLLSQRAPLKRSDIKLPGQQPPPTDTSPTNQAMPNETLQFYQAFGVRIEAFYHQRTEPDTQPNL LETA
Sequences:
>Translated_164_residues MLVVTNYPNVPIATSNAATDSARTDSQQRPPIIPPQQATKGHEERAFNPQHERTADHAQNQAKLRESVQQKQQGQSQQQE QSGQEKQKQAANLNLKQLLSQRAPLKRSDIKLPGQQPPPTDTSPTNQAMPNETLQFYQAFGVRIEAFYHQRTEPDTQPNL LETA >Mature_164_residues MLVVTNYPNVPIATSNAATDSARTDSQQRPPIIPPQQATKGHEERAFNPQHERTADHAQNQAKLRESVQQKQQGQSQQQE QSGQEKQKQAANLNLKQLLSQRAPLKRSDIKLPGQQPPPTDTSPTNQAMPNETLQFYQAFGVRIEAFYHQRTEPDTQPNL LETA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18430; Mature: 18430
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVVTNYPNVPIATSNAATDSARTDSQQRPPIIPPQQATKGHEERAFNPQHERTADHAQN CEEECCCCCCCEECCCCCCCCHHCCCCCCCCCCCCCHHHCCCHHHCCCCCHHHHHHHHHH QAKLRESVQQKQQGQSQQQEQSGQEKQKQAANLNLKQLLSQRAPLKRSDIKLPGQQPPPT HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCC DTSPTNQAMPNETLQFYQAFGVRIEAFYHQRTEPDTQPNLLETA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MLVVTNYPNVPIATSNAATDSARTDSQQRPPIIPPQQATKGHEERAFNPQHERTADHAQN CEEECCCCCCCEECCCCCCCCHHCCCCCCCCCCCCCHHHCCCHHHCCCCCHHHHHHHHHH QAKLRESVQQKQQGQSQQQEQSGQEKQKQAANLNLKQLLSQRAPLKRSDIKLPGQQPPPT HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCC DTSPTNQAMPNETLQFYQAFGVRIEAFYHQRTEPDTQPNLLETA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA